Gene detail

Detail information of GWHGAAZE030651

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007037433.1	Galactosyl transferase GMA12/MNN10 family protein [Theobroma cacao]
Swissprot	tr\|Q9LF80\|GT3_ARATH	Putative glycosyltransferase 3
trEMBL	tr\|A0A061G4G9\|A0A061G4G9_THECC	Galactosyl transferase GMA12/MNN10 family protein {ECO:0000313\|EMBL:EOY21934.1}
TAIR10	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46700711	46702087	+
GWHAAZE00000009	mRNA	46700711	46702087	+
GWHAAZE00000009	exon	46700711	46702087	+
GWHAAZE00000009	CDS	46700711	46702087	+

Transcript Sequence
>GWHTAAZE030685 ATGGGTCAAGAAACTTTCACAGCAGCTCAGAAGAGAAGCGGCGGAGCAACACTCCCCACCACCGCCAACGGCGCCACCAGAGGCGGAGCCCGCACCACTTCCCTTATCCCCCGCGGCCGCCAGATCCACAAAACCTTCAACAACATCAAGATCACAATCCTCTGCGGCTTCGTCACAATCCTCGTTCTGCGTGGCACCATCGGCCTCGGCAACCTCGTTTCCTCTGAATCAGAGGCTGAGAACCAAAATATCATCGAAGAAACCAACCGGATCCTAGCCGAGATCCGATCCGATAAAGACCCTGATGATCCCAACGAACTCTCCGAACCCGAGGTAAACCCCAATGTCACTTACACTCTGGGTCCCAAGATTTCCAATTGGGACCAAGAGCGTAAAATCTGGCTCGATCGGAACCCTAATTTCCCCAATTTCGTCAACGGTAAAGCTAGGATCTTGCTTGTAACTGGGTCTCCCCCAAACCCTTGTGATAACGCAATTGGGGATCATTATTTGTTGAAGTCTATCAAGAATAAGATTGATTATTGTAGGTTACATGGGATTGAGATTGTGTATAATATGGCTCATTTGGACAAGGAGCTTGCTGGGTATTGGGCGAAATTGCCCTTGATTCGTAGGCTCATGTTGTCTCACCCGGAAGTGGAGTGGATTTGGTGGATGGATAGTGATGCATTGTTCACTGATATGGTGTTTGAAATACCCTTGTCCAAGTATGATAACTATAATATGGTTATTCATGGGTACCCCGATTTGTTGTTCAATCAAAAGTCTTGGATTGCGTTGAACACAGGTAGTTTTTTGTTTAGGAATTGCCAGTGGTCTTTGGATCTGCTTGATACTTGGGCACCAATGGGTCCAAAGGGTGCGATTCGCGATGAAGCTGGAAGAATCTTGACCGCGAATTTGAAAGGCAGGCCTGCGTTCGAGGCTGATGATCAGTCGGCCTTGATTTACCTGTTGATTTCGCAAAAGGATCAGTGGATGGACAAGGTGTTTGTAGAAAATGCTTATTTTCTACATGGGTATTGGGCTGGGTTGGTGGATCGGTACGAAGAGATGATTGAGAAGTACCATCCAGGTTTGGGGGATGAGAGGTGGCCATTTGTGACCCATTTTGTGGGATGCAAGCCCTGTGGGAGCTATGGGGATTACCCAGTCGAGAAGTGTTTGAGAAGTATGGAGAGGGCCTTCAATTTTGCGGATAACCAGGTGCTCAAGCTATATGGATTTAGGCACAGAGGCTTGGTGAGCCCTAAGATCAAGAGGATTAGGAATGAAACTATTACCCCTTTGGAGTTTGTAGATCAGTTTGATATCCGGCATTCTGCACACAGGAGCAGCAGTGGATCACAGAGCTAG

Network for GWHGAAZE030651

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0185

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05637.13	Glyco_transf_34	148	386	3.30E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.973
	SRR3591706	second leaf	20.961
	SRR3591707	mature leaf	12.051
	SRR3591708	Shoot apex	25.592
	SRR3591709	Stem	33.806
	SRR3591710	White floral bud	46.653
	SRR3591711	White flower	23.325
	SRR3591712	Green floral bud	50.937
	SRR3591713	Yellow flower	15.687
SRP173429	SRR8316895	Juvenile bud stage	31.863
	SRR8316896	Juvenile bud stage	37.419
	SRR8316897	Juvenile bud stage	16.085
	SRR8316894	Third green stage	13.858
	SRR8316900	Third green stage	42.026
	SRR8316901	Third green stage	56.169
	SRR8316898	Complete white stage	26.960
	SRR8316899	Complete white stage	86.698
	SRR8316903	Complete white stage	41.258
	SRR8316902	Silver flowering stage	9.859
	SRR8316904	Silver flowering stage	14.414
	SRR8316905	Silver flowering stage	6.712
	SRR8316906	Gold flowering stage	18.361
	SRR8316907	Gold flowering stage	16.891
	SRR8316908	Gold flowering stage	16.086
SRP132670	SRR6706286	Control	61.155
	SRR6706287	Light intensity 50%	72.306
	SRR6706288	Light intensity 20%	79.487
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.035
	CNS0095593	Slightly white alabastrum(diploid) 2	31.957
	CNS0095594	Slightly white alabastrum(diploid) 3	28.121
	CNS0095595	Whole white alabastrum(diploid) 2	32.225
	CNS0095596	Whole white alabastrum(diploid) 3	25.564
	CNS0095597	Whole white alabastrum(diploid) 4	31.268
	CNS0095598	Silvery flower (diploied) 1	31.118
	CNS0095599	Silvery flower (diploied) 2	35.093
	CNS0095600	Silvery flower (diploied) 3	34.512
	CNS0095601	Golden flower (diploid) 1	21.721
	CNS0095602	Golden flower (diploid) 2	38.073
	CNS0095603	Golden flower (diploid) 3	34.958
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.471
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.712
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.106
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.190
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.375
	CNS0095610	Silvery flower (tetraploid) 1	22.888
	CNS0095611	Silvery flower (tetraploid) 2	17.383
	CNS0095612	Silvery flower (tetraploid) 3	21.461
	CNS0095613	Golden flower (tetraploid) 1	8.029
	CNS0095614	Golden flower (tetraploid) 2	19.717
	CNS0095615	Golden flower (tetraploid) 3	17.475
CRA001975	CRR073297	Stem 1	45.963
	CRR073298	Stem 2	48.522
	CRR073299	Stem 3	43.152
	CRR073300	Leaf 1	76.345
	CRR073301	Leaf 2	78.677
	CRR073302	Leaf 3	65.557
	CRR073303	Juvenile bud 1	73.534
	CRR073304	Juvenile bud 2	90.386
	CRR073305	Juvenile bud 3	114.962
	CRR073306	Third green 1	45.324
	CRR073307	Third green 2	54.980
	CRR073308	Third green 3	50.930
	CRR073309	Second white 1	19.159
	CRR073310	Second white 2	16.060
	CRR073311	Second white 3	16.825
	CRR073312	Silver flowering 1	22.379
	CRR073313	Silver flowering 2	27.570
	CRR073314	Silver flowering 3	21.878
	CRR073315	Gold flowering 1	18.612
	CRR073316	Gold flowering 2	20.585
	CRR073317	Gold flowering 3	16.924
	CRR073318	Tawny withering 1	42.139
	CRR073319	Tawny withering 2	30.448
	CRR073320	Tawny withering 3	39.028