Gene detail

Detail information of GWHGAAZE030653

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18315.1	0	unnamed protein product [Coffea canephora]
COG	YP_007149728.1	4E-14	peptidase S16, lon domain protein
Swissprot	tr\|Q9SYU4\|PEX10_ARATH	0.00000006	Peroxisome biogenesis factor 10
trEMBL	tr\|A0A068VBV1\|A0A068VBV1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_223 {ECO:0000313\|EMBL:CDP18315.1}
TAIR10	AT1G18660.4	1E-149	zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46727037	46733077	+
GWHAAZE00000009	mRNA	46727037	46733077	+
GWHAAZE00000009	exon	46727037	46727105	+
GWHAAZE00000009	exon	46728238	46728320	+
GWHAAZE00000009	exon	46728831	46728915	+
GWHAAZE00000009	exon	46729010	46729093	+
GWHAAZE00000009	exon	46729314	46729375	+
GWHAAZE00000009	exon	46729526	46729707	+
GWHAAZE00000009	exon	46729947	46730007	+
GWHAAZE00000009	exon	46730097	46730274	+
GWHAAZE00000009	exon	46730472	46730555	+
GWHAAZE00000009	exon	46730626	46730687	+
GWHAAZE00000009	exon	46730804	46730840	+
GWHAAZE00000009	exon	46732198	46732247	+
GWHAAZE00000009	exon	46732352	46732463	+
GWHAAZE00000009	exon	46732622	46732697	+
GWHAAZE00000009	exon	46732821	46732900	+
GWHAAZE00000009	exon	46732991	46733077	+
GWHAAZE00000009	CDS	46727037	46727105	+
GWHAAZE00000009	CDS	46728238	46728320	+
GWHAAZE00000009	CDS	46728831	46728915	+
GWHAAZE00000009	CDS	46729010	46729093	+
GWHAAZE00000009	CDS	46729314	46729375	+
GWHAAZE00000009	CDS	46729526	46729707	+
GWHAAZE00000009	CDS	46729947	46730007	+
GWHAAZE00000009	CDS	46730097	46730274	+
GWHAAZE00000009	CDS	46730472	46730555	+
GWHAAZE00000009	CDS	46730626	46730687	+
GWHAAZE00000009	CDS	46730804	46730840	+
GWHAAZE00000009	CDS	46732198	46732247	+
GWHAAZE00000009	CDS	46732352	46732463	+
GWHAAZE00000009	CDS	46732622	46732697	+
GWHAAZE00000009	CDS	46732821	46732900	+
GWHAAZE00000009	CDS	46732991	46733077	+

Transcript Sequence
>GWHTAAZE030687 ATGTTGAGCGAAGCATCCTCCTCTGGATTCAGCTTGGAAGGCCTCGACGATGTCGAAGATTTTGTTTGGGCAATCAATTGCTACTCAAGGGCTAATAATATTAAACCAGGTGATCCCATCATTCTTAGCAACCGATGTGCTGCTTATCTCAGGATTAGCCAATTTCTGAAACACAGGCCTCCATCAGCTTCTGAAGATAGACCACTGAGTGGTCTTGATCCTACAATACATGCTGGACTTGCACTAAAGGATGCTGAGAAGGTGATGAATGGAAGTAGTTCAGTAACGTCATTCATTTTGAAGGCCAATTCTCTCCTTTTGTTAGAAAAATATGAGGAGGCCCATGACGTTATTCTTTCAGGGCTTCAGATTGATCCTCTAAGCAATCCTCTTCAAAATTTGGTGAGAAGAACAGGGGTTACAATTGTGAGGAGAAGCCATGGGAGACCACAACGTTCTGATGATTTCGATTGCACGGTTTGCTTGAAGTTAATGTACGAACCTATTACAACTCCTTGTGGACATTCTTTTTGCCGGTCATGCCTGTTTCAGGTAATGGACCAAGGTAACAGATGTCCATTGTGCCGAACAGTTTTGTTTATTAGTTCTAGAACATGTGCAATCAGTGTGACTCTGAACAGCATAATACAGAAGAACTTTCCAGAGGAATATGCTGAAAGGAAATCGGAGCATGACAGTTTGACAAACTTGGGCGTTGACTTTCTGCCTCTTTTTGTCATGGATGTTGTCTTACCATGCCAGAAGTTTCATCTCAACATATTTGAAGCCCGATATAGACTTATGGTGAGAAGGATAATGGAAGGAAATCGTCGAATGGGAATGGTAGATATTGTGACTGTTCCTTTTCTTTCCTTTTTAATCATCGAGGTTATTAAAGATCCTACAACACGTTCGTTAGTTGATTGTGCTTGCGAAGTGGAGATCATAGATTGTGAGCCACTTCCAGATGGGCGTTTCTTTTTAGAGGTTGAAAGTAGGAGGAGATGTCGCATCCTCCGAGATTGTAATCAAGATGGGTACCGTGTCGCTGAGGTTGAGTGGGTACAGGATATATGCCCACCAGAAGGATCAAGAGAGAGAGCAGATGTAAGTGTGTTGCAATTTTTTCCAATACCTTCTCAGTTCTATTTGCAGGAAACAACAAATAGGACTGCAGCATATGCTGTGTCATGGATGAGGGAGGCACAAGCAGCAGCACAAGGAGATCAAGCAAGATTAGCACAACTCTTTAAAGCTGAAGGGTTGATGCCCACAACTCAAGATCCTGAGCGCTTCAGTTTTTGGCTTGTTACTCTAACAAACAGGAGACCACCAGAAAAATTGGCCCTCCTTCGCCTTAGAGATACAAAAGAGGTATTGGATTTTGAATAG

Network for GWHGAAZE030653

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13923.7	zf-C3HC4_2	158	195	4.60E-12
PF02190.17	LON_substr_bdg	242	458	1.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.978
	SRR3591706	second leaf	4.516
	SRR3591707	mature leaf	1.658
	SRR3591708	Shoot apex	4.222
	SRR3591709	Stem	8.716
	SRR3591710	White floral bud	6.111
	SRR3591711	White flower	12.996
	SRR3591712	Green floral bud	6.078
	SRR3591713	Yellow flower	11.740
SRP173429	SRR8316895	Juvenile bud stage	5.561
	SRR8316896	Juvenile bud stage	6.710
	SRR8316897	Juvenile bud stage	7.880
	SRR8316894	Third green stage	2.564
	SRR8316900	Third green stage	5.211
	SRR8316901	Third green stage	6.307
	SRR8316898	Complete white stage	2.092
	SRR8316899	Complete white stage	5.665
	SRR8316903	Complete white stage	3.461
	SRR8316902	Silver flowering stage	4.055
	SRR8316904	Silver flowering stage	3.811
	SRR8316905	Silver flowering stage	1.936
	SRR8316906	Gold flowering stage	5.387
	SRR8316907	Gold flowering stage	4.887
	SRR8316908	Gold flowering stage	6.574
SRP132670	SRR6706286	Control	5.080
	SRR6706287	Light intensity 50%	6.299
	SRR6706288	Light intensity 20%	5.700
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.037
	CNS0095593	Slightly white alabastrum(diploid) 2	5.594
	CNS0095594	Slightly white alabastrum(diploid) 3	7.371
	CNS0095595	Whole white alabastrum(diploid) 2	3.455
	CNS0095596	Whole white alabastrum(diploid) 3	5.054
	CNS0095597	Whole white alabastrum(diploid) 4	4.652
	CNS0095598	Silvery flower (diploied) 1	5.743
	CNS0095599	Silvery flower (diploied) 2	3.997
	CNS0095600	Silvery flower (diploied) 3	3.378
	CNS0095601	Golden flower (diploid) 1	5.726
	CNS0095602	Golden flower (diploid) 2	5.094
	CNS0095603	Golden flower (diploid) 3	4.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.382
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.989
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.117
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.042
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.142
	CNS0095610	Silvery flower (tetraploid) 1	8.331
	CNS0095611	Silvery flower (tetraploid) 2	5.570
	CNS0095612	Silvery flower (tetraploid) 3	6.061
	CNS0095613	Golden flower (tetraploid) 1	8.949
	CNS0095614	Golden flower (tetraploid) 2	8.946
	CNS0095615	Golden flower (tetraploid) 3	1.981
CRA001975	CRR073297	Stem 1	7.994
	CRR073298	Stem 2	4.523
	CRR073299	Stem 3	1.999
	CRR073300	Leaf 1	3.821
	CRR073301	Leaf 2	4.633
	CRR073302	Leaf 3	1.019
	CRR073303	Juvenile bud 1	1.292
	CRR073304	Juvenile bud 2	0.906
	CRR073305	Juvenile bud 3	1.218
	CRR073306	Third green 1	0.958
	CRR073307	Third green 2	0.618
	CRR073308	Third green 3	0.729
	CRR073309	Second white 1	0.196
	CRR073310	Second white 2	2.081
	CRR073311	Second white 3	1.729
	CRR073312	Silver flowering 1	2.718
	CRR073313	Silver flowering 2	0.913
	CRR073314	Silver flowering 3	2.066
	CRR073315	Gold flowering 1	2.679
	CRR073316	Gold flowering 2	4.602
	CRR073317	Gold flowering 3	0.493
	CRR073318	Tawny withering 1	5.269
	CRR073319	Tawny withering 2	8.829
	CRR073320	Tawny withering 3	4.537