Gene detail

Detail information of GWHGAAZE030666

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663303.1	0	PREDICTED: DNA annealing helicase and endonuclease ZRANB3 isoform X1 [Vitis vinifera]
COG	YP_006773581.1	1E-18	SNF2-like protein
Swissprot	tr\|Q9S775\|PKL_ARATH	2E-13	CHD3-type chromatin-remodeling factor PICKLE
trEMBL	tr\|M5W9M5\|M5W9M5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10016.1}
TAIR10	AT5G07810.1	2E-164	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46878508	46887442	+
GWHAAZE00000009	mRNA	46878508	46887442	+
GWHAAZE00000009	exon	46878508	46878852	+
GWHAAZE00000009	exon	46879130	46879489	+
GWHAAZE00000009	exon	46880820	46880952	+
GWHAAZE00000009	exon	46881714	46881889	+
GWHAAZE00000009	exon	46882814	46882941	+
GWHAAZE00000009	exon	46883278	46883368	+
GWHAAZE00000009	exon	46883559	46883618	+
GWHAAZE00000009	exon	46883979	46884165	+
GWHAAZE00000009	exon	46885501	46885700	+
GWHAAZE00000009	exon	46887317	46887442	+
GWHAAZE00000009	CDS	46878508	46878852	+
GWHAAZE00000009	CDS	46879130	46879489	+
GWHAAZE00000009	CDS	46880820	46880952	+
GWHAAZE00000009	CDS	46881714	46881889	+
GWHAAZE00000009	CDS	46882814	46882941	+
GWHAAZE00000009	CDS	46883278	46883368	+
GWHAAZE00000009	CDS	46883559	46883618	+
GWHAAZE00000009	CDS	46883979	46884165	+
GWHAAZE00000009	CDS	46885501	46885700	+
GWHAAZE00000009	CDS	46887317	46887442	+

Transcript Sequence
>GWHTAAZE030700 ATGGAAATCACAGAAGAACAGAGACAGAGAGCCGAAGCGAACCGTCGAGCAGCCCTAGCTAAGCGAAAACGACTCGCCGATGGGCAGCAAGATCCCTGGAAACTCTTCAAGTGCAGAAAGGTCTCTCCAGAACACAACCCTGTTTTTCCCAAACCCCAAGATAATAAGGTTCCGCTCGCTCCGATTGTCAAGCCCCTAACTCCGGACCAGTTGCCCGATAAATTTCGGGTCAGGCTCGAGATATGCTCCAAAGATTCGTTCTCCATCACTCCCGAGGCCATTCAGGGTTTTCGGTTCCCCGGTGAAGCCCATTGCCTGGAAAAATTAAGGGACTGCCTTTCTAATGTTGTGCCAACACATTACACACAAAACAGTGGAGGCGGAAGGGCTTCTGTTTACAAACTTGGAGACTATCGTGCAGTCCAGAGGTGCTTGAAGCCTTGTAGGGGAGTTGAAATTGACGATATACCTTGGGGAACGTTTAATGTTATTGAGAAACTTTCAAATTCTGTCACTCCGGGACAATGGATACCATGCAGGCCAGAGCATTTACCTGATGAAAAGGTTGATGAATTAATTGAAAGGCTCCCAAAATCGTTGGTTCAATCACTGCTGCCTTTCCAATATGAGGGGGTCCAGTTTGGATTACGAAGGGGCGGTCGGTGTCTCATTGCCGATGAAATGGGGCTTGGGAAAACACTTCAGGCCATAGCAATTGCGGGCTGTTTCATGAGCGAAGGTTCTATACTAGTTGTTTGCCCAGCTATTTTGCGATTTTCCTGGGCTGAAGAATTTGAGCGCTGGCTTCCTACTTGTTTGCCATCTGATATACATCTTGTTTTTGGTCATCAAAATAATCCAGCAAACTTACCAAGATGTCCAAAGGTTGTGGTTATTTCCTATACAATGCTTCACCGCTTGCGAAAGAGCTTGTTGGAACTAGATTGGGCTGTCTTGATAGTCGATGAATCACATCATGTACGCTGCACAAAAAAACCATCAGAACCAGGAGAGGAGTTCCCTACCTCCATATTGTGTTCTACTCACTTCTCTTTTGTTATTCACCAGATAAAAGCTGTCCTTGATGTGGCAACAAAGGTCAAGCATATAGTTCTACTGTCAGGGACTCCTTCACTGTCAAGGGATGGTTTGCTTGGCAAGACGAAATATGAATTTGCAAAAACTTACTGCTCTGTCCAATTTGTCCGGGGTTGTCAAGGGAGAGTCTTCCAGGATTTTTCAAAGGGGATACGCTTGGAGGAATTGCATTTGTTACTGAAGCAAACAGTTATGATAAGACGCTTGAAGGAGCAAGTACTGGAGGAGTTACCGCCCAAACGTCGACAAATTTTGCGTTTGATATTGAAGAGATCAGATATTGATTTAGCAATAGATGCATGCAAAGTGGTGAACAGTGATGCTTCTGCAAACAATGACACTGAAGATGGGCCACTGCATATTGCTGCTGACGCGCCTGATGTTAATGGTGGGCGTTGCCAATCTACAAGGAAACTCTCTCACCAAGAAGTTGGTATTGCGAAGTTGTCAGGGTTCTGTGAGTGGCTTTCTTTTCATCCAATCATTGCAGAGATGGATGCTGACGAAAACATGGCAAAAAGCATCAGTTCGCACAAGATGATAATTTTTGCTCATCACCATAAGGTTCTCGACAGAGTACAGGTTAAGATTGCGATAATTGGAATCCTTGCTGGGGGTGCTGGACTTAATTTGTCAGCAGCACAAAATGTTGTGTTCTTGGAGTTGCCTAAGGAACCTGCTCACTTGCTTCAGGTGTACTTATCATAA

Network for GWHGAAZE030666

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	222	457	4.10E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.357
	SRR3591706	second leaf	3.504
	SRR3591707	mature leaf	3.597
	SRR3591708	Shoot apex	12.033
	SRR3591709	Stem	8.029
	SRR3591710	White floral bud	8.384
	SRR3591711	White flower	10.952
	SRR3591712	Green floral bud	7.173
	SRR3591713	Yellow flower	8.494
SRP173429	SRR8316895	Juvenile bud stage	3.068
	SRR8316896	Juvenile bud stage	3.499
	SRR8316897	Juvenile bud stage	2.267
	SRR8316894	Third green stage	1.776
	SRR8316900	Third green stage	3.024
	SRR8316901	Third green stage	2.651
	SRR8316898	Complete white stage	0.710
	SRR8316899	Complete white stage	3.459
	SRR8316903	Complete white stage	1.685
	SRR8316902	Silver flowering stage	1.007
	SRR8316904	Silver flowering stage	1.206
	SRR8316905	Silver flowering stage	0.538
	SRR8316906	Gold flowering stage	1.192
	SRR8316907	Gold flowering stage	1.862
	SRR8316908	Gold flowering stage	1.983
SRP132670	SRR6706286	Control	2.909
	SRR6706287	Light intensity 50%	3.214
	SRR6706288	Light intensity 20%	3.591
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.002
	CNS0095593	Slightly white alabastrum(diploid) 2	1.134
	CNS0095594	Slightly white alabastrum(diploid) 3	2.276
	CNS0095595	Whole white alabastrum(diploid) 2	1.605
	CNS0095596	Whole white alabastrum(diploid) 3	1.021
	CNS0095597	Whole white alabastrum(diploid) 4	1.840
	CNS0095598	Silvery flower (diploied) 1	2.375
	CNS0095599	Silvery flower (diploied) 2	2.329
	CNS0095600	Silvery flower (diploied) 3	3.930
	CNS0095601	Golden flower (diploid) 1	2.130
	CNS0095602	Golden flower (diploid) 2	3.968
	CNS0095603	Golden flower (diploid) 3	2.746
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.171
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.595
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.305
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.215
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.141
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.762
	CNS0095610	Silvery flower (tetraploid) 1	5.714
	CNS0095611	Silvery flower (tetraploid) 2	5.178
	CNS0095612	Silvery flower (tetraploid) 3	3.558
	CNS0095613	Golden flower (tetraploid) 1	1.936
	CNS0095614	Golden flower (tetraploid) 2	3.579
	CNS0095615	Golden flower (tetraploid) 3	3.035
CRA001975	CRR073297	Stem 1	4.731
	CRR073298	Stem 2	4.126
	CRR073299	Stem 3	1.902
	CRR073300	Leaf 1	3.040
	CRR073301	Leaf 2	2.676
	CRR073302	Leaf 3	1.681
	CRR073303	Juvenile bud 1	1.635
	CRR073304	Juvenile bud 2	0.575
	CRR073305	Juvenile bud 3	1.871
	CRR073306	Third green 1	0.414
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.149
	CRR073309	Second white 1	0.063
	CRR073310	Second white 2	0.088
	CRR073311	Second white 3	0.192
	CRR073312	Silver flowering 1	0.057
	CRR073313	Silver flowering 2	0.719
	CRR073314	Silver flowering 3	0.154
	CRR073315	Gold flowering 1	0.393
	CRR073316	Gold flowering 2	0.774
	CRR073317	Gold flowering 3	0.153
	CRR073318	Tawny withering 1	0.964
	CRR073319	Tawny withering 2	1.557
	CRR073320	Tawny withering 3	0.986