Gene detail

Detail information of GWHGAAZE030668

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663308.1	2.2985E-161	PREDICTED: DNA annealing helicase and endonuclease ZRANB3 isoform X5 [Vitis vinifera]
COG	YP_006420509.1	2E-12	HNH endonuclease
trEMBL	tr\|K7KW28\|K7KW28_SOYBN	4E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G21530.2}
TAIR10	AT5G07810.1	3E-103	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46892339	46898110	+
GWHAAZE00000009	mRNA	46892339	46898110	+
GWHAAZE00000009	exon	46892339	46892341	+
GWHAAZE00000009	exon	46892737	46892937	+
GWHAAZE00000009	exon	46893050	46893181	+
GWHAAZE00000009	exon	46893276	46893383	+
GWHAAZE00000009	exon	46893625	46893933	+
GWHAAZE00000009	exon	46894105	46894286	+
GWHAAZE00000009	exon	46894351	46894453	+
GWHAAZE00000009	exon	46894568	46894713	+
GWHAAZE00000009	exon	46895522	46895658	+
GWHAAZE00000009	exon	46897849	46898015	+
GWHAAZE00000009	exon	46898099	46898110	+
GWHAAZE00000009	CDS	46892339	46892341	+
GWHAAZE00000009	CDS	46892737	46892937	+
GWHAAZE00000009	CDS	46893050	46893181	+
GWHAAZE00000009	CDS	46893276	46893383	+
GWHAAZE00000009	CDS	46893625	46893933	+
GWHAAZE00000009	CDS	46894105	46894286	+
GWHAAZE00000009	CDS	46894351	46894453	+
GWHAAZE00000009	CDS	46894568	46894713	+
GWHAAZE00000009	CDS	46895522	46895658	+
GWHAAZE00000009	CDS	46897849	46898015	+
GWHAAZE00000009	CDS	46898099	46898110	+

Transcript Sequence
>GWHTAAZE030702 ATGGTCGAAAATATTTCTTATCTTGAAACAACCGGAAAAACAGACTGCGTAAATGAGAACCAGTTTGTAGAGAGAGCAAATGAGGATGTTTCTGCAGTCAAGTTAGTGGAGTTCCCTAAACCTTGTTTTCATCAATATTTGCAGCCTGATGAAGAACAGGATGACAGTGGTTGTTATTCATCTCAAAATAAACTTGAAACTGAGGTTGGCATCGCTTCTGATCCAGAAATGGGAATGCGTGCAGGAGGAAATACTTTTGAAGATAAAGTAGAAACTGCTGCAAGAATTTCTAGGTGTAACTTAGTAGATGGCACCGAAGCCAATGGGCAAATGGAGGTGAACAAGAAGTTTCCTGAAGCAGCAGAGTTGGGAAAAGGGGAATCTTTCAAGCTGATTGAAGCCAATGCATGCATCTCTTCGGAAGTAAATTTTCTCCGCTTTGAGGTTAGTCAATATACTGGACGGATCCACTTGTACTCTTGCATTCCAGGAGTAGATTTAAGACCAAGACCACTTTTTGAGAATTTTCGACCAGAGGAACTTGAGTTACAGCCTCCTACTGAGGACAGCATGAAAATGGATTCTAAATGTATCAAAGAAGATCTGAGGTATAGAAATGCTCTTGTGGCTTTCATCAAAGAATGGAACAGTTTAAGGCCTATTGAACAAAAGAAATTACTTCTCAAGCCTTTACAACTCCCTTTATCTGTTGAGCTGTGCTGTTTGGATGAAAGCCTTAACCATGATTCTGGGGGATTGCTGAAGGGTGGAAGTAAAAAGCGTCGTACATCTTTGGAGGATATAGGCGAACCCTTACCATCAAATGCCTGCTGGAGGAAGGTTCGTCTTGGCAATGGCAAAAAAGAGAGAGAATATGAACAGGGTTGGACTCTCATGGATGAACCGCTTTGCAAACTCTGTCAAGCTCCTTGCCAGAGCAACAATGCCAAGAAACCTGAATTTTTTGAGGATCTTTTCTGTGAGTTACGCTGCTATGAAGAATATCGCTTAAGAACTAGCAACAGATACCTTCGAGAGGGGCTTTTCCAAATTGAACGTGGCATCTGCACGAGCTGCCAACTAAACTGCCATAAACTTGTGGAGCACATAAGGCCGTTGTCATTTGAGAAGCGGCAAGAGTATATCAAGAAAGTAGCACCAGAGCTGGCAAAGCGCATGAAATTATTTGACAAGCTTGTTCTTGATCCAACTGAGGGCAATGCATGGCATGCAGACCACATTGTACCTGTCTATCAAGGAGGAGGTACATTAAGAATTTTTTGTTTGTTGTTCTTCCACAATTGTTTCTCTCTTGTTGGAGGAGAATGCACACTAGAGAACATGAGGACCCTTTGTGTTGCATGCCATGCTGATGTTACTGCTGCACAAGGTGCCGAACGACGTTCACGTAACGCCAAGGCTAGGAAACAACTTAAAGCCATCCTCAGAAACGTACAGAACTCTGGGAAAATTGATGCTAGGCAAAAGGCTGCCAGTTGA

Network for GWHGAAZE030668

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.574
	SRR3591706	second leaf	6.006
	SRR3591707	mature leaf	6.413
	SRR3591708	Shoot apex	22.227
	SRR3591709	Stem	13.983
	SRR3591710	White floral bud	13.454
	SRR3591711	White flower	16.129
	SRR3591712	Green floral bud	12.843
	SRR3591713	Yellow flower	15.456
SRP173429	SRR8316895	Juvenile bud stage	33.320
	SRR8316896	Juvenile bud stage	46.309
	SRR8316897	Juvenile bud stage	19.584
	SRR8316894	Third green stage	20.073
	SRR8316900	Third green stage	50.454
	SRR8316901	Third green stage	48.514
	SRR8316898	Complete white stage	13.780
	SRR8316899	Complete white stage	68.429
	SRR8316903	Complete white stage	25.932
	SRR8316902	Silver flowering stage	15.547
	SRR8316904	Silver flowering stage	20.343
	SRR8316905	Silver flowering stage	8.649
	SRR8316906	Gold flowering stage	35.038
	SRR8316907	Gold flowering stage	30.159
	SRR8316908	Gold flowering stage	35.825
SRP132670	SRR6706286	Control	49.800
	SRR6706287	Light intensity 50%	52.578
	SRR6706288	Light intensity 20%	53.713
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.545
	CNS0095593	Slightly white alabastrum(diploid) 2	37.331
	CNS0095594	Slightly white alabastrum(diploid) 3	33.852
	CNS0095595	Whole white alabastrum(diploid) 2	34.369
	CNS0095596	Whole white alabastrum(diploid) 3	30.525
	CNS0095597	Whole white alabastrum(diploid) 4	26.582
	CNS0095598	Silvery flower (diploied) 1	43.464
	CNS0095599	Silvery flower (diploied) 2	31.501
	CNS0095600	Silvery flower (diploied) 3	33.514
	CNS0095601	Golden flower (diploid) 1	43.057
	CNS0095602	Golden flower (diploid) 2	40.595
	CNS0095603	Golden flower (diploid) 3	38.544
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.718
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.252
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.928
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.947
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.966
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.153
	CNS0095610	Silvery flower (tetraploid) 1	8.050
	CNS0095611	Silvery flower (tetraploid) 2	7.237
	CNS0095612	Silvery flower (tetraploid) 3	6.225
	CNS0095613	Golden flower (tetraploid) 1	4.882
	CNS0095614	Golden flower (tetraploid) 2	5.858
	CNS0095615	Golden flower (tetraploid) 3	4.365
CRA001975	CRR073297	Stem 1	52.408
	CRR073298	Stem 2	48.106
	CRR073299	Stem 3	42.147
	CRR073300	Leaf 1	55.587
	CRR073301	Leaf 2	46.516
	CRR073302	Leaf 3	36.241
	CRR073303	Juvenile bud 1	36.001
	CRR073304	Juvenile bud 2	24.213
	CRR073305	Juvenile bud 3	44.428
	CRR073306	Third green 1	5.383
	CRR073307	Third green 2	4.822
	CRR073308	Third green 3	6.665
	CRR073309	Second white 1	6.116
	CRR073310	Second white 2	9.224
	CRR073311	Second white 3	8.828
	CRR073312	Silver flowering 1	7.825
	CRR073313	Silver flowering 2	9.630
	CRR073314	Silver flowering 3	7.534
	CRR073315	Gold flowering 1	17.172
	CRR073316	Gold flowering 2	23.777
	CRR073317	Gold flowering 3	16.316
	CRR073318	Tawny withering 1	37.787
	CRR073319	Tawny withering 2	37.070
	CRR073320	Tawny withering 3	39.012