Gene detail

Detail information of GWHGAAZE030674

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037499.1	2.4054E-129	C2H2-like zinc finger protein, putative [Theobroma cacao]
Swissprot	tr\|Q9SHD0\|ZAT4_ARATH	5E-25	Zinc finger protein ZAT4
trEMBL	tr\|A0A061FWS6\|A0A061FWS6_THECC	9E-130	C2H2-like zinc finger protein, putative {ECO:0000313\|EMBL:EOY22000.1}
TAIR10	AT1G26610.1	2E-37	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	46942421	46943917	-
GWHAAZE00000009	mRNA	46942421	46943917	-
GWHAAZE00000009	exon	46942421	46943917	-
GWHAAZE00000009	CDS	46942421	46943917	-

Transcript Sequence
>GWHTAAZE030708 ATGGACGAAGATCAAGAACCAAGACATGCCTGCAAATTGTGCTACAAGATTTTCCCTTGTGGAAGATCCTTGGGGGGTCATATGAGGTCCCACGTGATGAATTCTGCTGAAACTCATCATAGAAAGCCCACCAAAAAGAAGCTCTCATCCCTTAACTATGGCCAAAGCAATGCTTTCACAAATTATAGCCTTAGAGAGAAATCGAAAAAAGCTTGCAAATTCGCAGATTCAAGTGAACATACTCTGTTTCTTGATAAGCTTTGCAAAGAATGTGGCAAAGGTTTCCAATCTTCGAAGGCCTTGTTTGGCCACATGAAGTGTCACCCTGAGAGAGTTTCACACACTACTGTCGAGGATGACGATTCATGGACCAGCCAATCGGATGATGGAACCGTAGCTCTGAATAGAAAGAAGAGATCATCAAAACGAATGAAAAGGTACATGGCCAATGATGCAACTTCCTTTTCGTTCTCTGTTAGTGCTAATGCTTCAACATCTGTGATTTCTGAAATTGAGCAAGAACAAGAGGAGGTTGCTATGTGTTTGATGATGCTTTCTCGGGATGTGGGCCATTGGGGCGTTGGTTTAAACTCTGTTGACGAATCATCTGATAACTATTCTGGGTTCTTGGCTAGGAATCTTGTGATCACTAAAATTGAGACTGAGAAATTGATGTGTAATGATGATGAAATTGTGAAATTCAAGAAACTGCGAAATGGGAAATTAGAGTCTAGTAGTGTGGATTTTGAGAATTTGAAATCCGAGGATAGAAGATCAAAATTTGGTGCTAGTGGGATTCTGAGAAATGGGTATAGGATGAAGAAATCAGAAATGCAAGTTCATGATATTCTTGGAAAAATAAAGGAAGTAGGTGAGGAATTCAGATCGGGGGAGAATTTGGTCAAGAAAAGTGAATTTGGTGAAGCTAATGAATTGGGTTATAAGAAAAGTAATTCAACCAAGAGAAAGGATCATGATTTGTTTGATCCAAAATTAGGCATGGACTACTCCAGAAAATTAGGGTATGGTGCTTCAGATTCTCAAGAAAAGAAGAGCAAATTTGAGTGTGATACCTGCAAAAAGACATTCCACTCATACCAAGCCCTTGGAGGTCATAGAGCAAGCCACAAGACGCAGAAAAGCTGCTTAGCTTTGACGAAAATCAGTGGCATCGAAAACAGCAACTATACTGATCAATTTTCTCCGTACTCAAACAACCCCGTTGACCATGAAATGGTCATTGGCAATGGTGAAAAAGCGGATGCAATTAGTACTGATTCAAAGAAGAACAAGGGGTCACATGAGTGCCCAATTTGCTTCAGAGTTTTTTCTTCCGGACAGGCTTTAGGGGGTCACAAGAGATCACACCTAATTGTAGTACAAAAAGCACGTCCAATTCAAGAAGAAATGAGAGAGTTTCTTGATCTGAATATGCCTGCTCCTGCCGAAGGAGAGAGCAGTAATAGCTATGGGGGGGTTCAAGCCATGGTGGGTTGA

Network for GWHGAAZE030674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	8	31	8.80E-05
PF13912.7	zf-C2H2_6	88	110	1.50E-07
PF13912.7	zf-C2H2_6	354	378	1.40E-11
PF13912.7	zf-C2H2_6	434	457	4.40E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.164
	SRR3591706	second leaf	0.185
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	2.457
	SRR3591710	White floral bud	0.945
	SRR3591711	White flower	0.480
	SRR3591712	Green floral bud	3.245
	SRR3591713	Yellow flower	0.060
SRP173429	SRR8316895	Juvenile bud stage	1.023
	SRR8316896	Juvenile bud stage	0.590
	SRR8316897	Juvenile bud stage	0.877
	SRR8316894	Third green stage	0.416
	SRR8316900	Third green stage	2.833
	SRR8316901	Third green stage	1.412
	SRR8316898	Complete white stage	0.230
	SRR8316899	Complete white stage	0.753
	SRR8316903	Complete white stage	0.329
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.090
	SRR8316905	Silver flowering stage	0.083
	SRR8316906	Gold flowering stage	0.027
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.001
SRP132670	SRR6706286	Control	0.871
	SRR6706287	Light intensity 50%	0.772
	SRR6706288	Light intensity 20%	0.780
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.989
	CNS0095593	Slightly white alabastrum(diploid) 2	1.066
	CNS0095594	Slightly white alabastrum(diploid) 3	2.125
	CNS0095595	Whole white alabastrum(diploid) 2	2.088
	CNS0095596	Whole white alabastrum(diploid) 3	2.663
	CNS0095597	Whole white alabastrum(diploid) 4	3.258
	CNS0095598	Silvery flower (diploied) 1	0.154
	CNS0095599	Silvery flower (diploied) 2	0.112
	CNS0095600	Silvery flower (diploied) 3	0.233
	CNS0095601	Golden flower (diploid) 1	0.120
	CNS0095602	Golden flower (diploid) 2	0.362
	CNS0095603	Golden flower (diploid) 3	0.184
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.749
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.334
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.582
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.148
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.452
	CNS0095610	Silvery flower (tetraploid) 1	0.626
	CNS0095611	Silvery flower (tetraploid) 2	0.859
	CNS0095612	Silvery flower (tetraploid) 3	0.045
	CNS0095613	Golden flower (tetraploid) 1	0.121
	CNS0095614	Golden flower (tetraploid) 2	0.377
	CNS0095615	Golden flower (tetraploid) 3	0.023
CRA001975	CRR073297	Stem 1	2.098
	CRR073298	Stem 2	1.007
	CRR073299	Stem 3	0.960
	CRR073300	Leaf 1	1.218
	CRR073301	Leaf 2	1.070
	CRR073302	Leaf 3	0.942
	CRR073303	Juvenile bud 1	1.078
	CRR073304	Juvenile bud 2	0.331
	CRR073305	Juvenile bud 3	0.601
	CRR073306	Third green 1	0.322
	CRR073307	Third green 2	1.079
	CRR073308	Third green 3	0.575
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.003
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.071
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.492
	CRR073319	Tawny withering 2	0.348
	CRR073320	Tawny withering 3	1.108