Gene detail

Detail information of GWHGAAZE030679

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGI16386.1	0	flavonoid 3' hydroxylase [Ribes nigrum]
COG	YP_003950164.1	2E-40	cytochrome p450
Swissprot	tr\|Q9SD85\|F3PH_ARATH	0	Flavonoid 3'-monooxygenase
trEMBL	tr\|A0A075BHH1\|A0A075BHH1_RIBNI	0	Flavonoid 3' hydroxylase {ECO:0000313\|EMBL:AGI16386.1}
TAIR10	AT5G07990.1	0	Cytochrome P450 superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47073526	47078369	+
GWHAAZE00000009	mRNA	47073526	47078369	+
GWHAAZE00000009	exon	47073526	47073987	+
GWHAAZE00000009	exon	47075610	47076101	+
GWHAAZE00000009	exon	47077728	47078369	+
GWHAAZE00000009	CDS	47073526	47073987	+
GWHAAZE00000009	CDS	47075610	47076101	+
GWHAAZE00000009	CDS	47077728	47078369	+

Transcript Sequence
>GWHTAAZE030713 ATGACCACTTCAATTGTACTTTTTCTCTACACTTCTTTTGCTGCATTTCTTCTCTACTGCCTGCTTAACCTGTGCACCCTCCTCCTTAACCGTCACCCAAAGCCACTACTACCACCAGGCCCAAAGCCATGGCCCATCATTGGGAACCTCCCACACCTTGGGTCCAAGCCCCACGAAACCCTAGGCGCCATGGCTCGAACCTACGGCCCACTCATGCACCTACGGCTCGGCTTCGTTGACGTTGTTGTGGCAGCTTCGGCTTCGGTGGCGGCTCAGTTCTTGAAAACCCACGATGCCAACTTCTCCAACCGGCCACCAAACTCCGGCGCCAAACATATTGCCTATAATTCTCAGGACCTTGTTTTTGCGCCGTACGGTCCTCGGTGGCGCATGTTAAGGAAAATATGCGCCCTTCATTTGTTCTCCGCTAAAGCTTTGGATGACTTCAGTCACGTGCGCCAGGAGGAGGTATCAATAATGACAAAGGCAATGGCAAGTGCGGGTAACAGCAACAAGGCTGTGAACTTGGGGAAATTGATAAACGTGTGCACCACAAACGCCCTAGGGCGCGTGATGATTGGGAGGAGGGTGTTCGGTGAAGAGAGCGGCGGAAAGGACGCAAAGGCCAATTCAGACGAGTTCAAAGAAATGGTGGTGGAGGTTATGGTGTTGGCAGGCGTGTTCAACCTCGGTGACTTTATCCCAACCCTCGAGTGGCTTGACCTTCAAGGGGTTACCTCCAAAATGAAGAAGATACACGCGCGATTTGACGCTTTCCTTAACGGAATAATAAAAGAGCATACCACTAGTAGTGAAAAAGGAGAGGACAGCCGTGGTGGTACCACGCGCAACCACGTGGATTTGTTGACTACCCTGATTTCGCTGAAGGATAATAATGCTGAGGCCAGTGAGGGTGGGAAGCTCACCGACACTGAAATAAAAGCCCTTCTTTTGAATTTATTTCTTGCTGGGACGGACACCTCGTCAAGCACAGTAGAATGGGCTATAGCTGAACTCGTTCGCCACCCGAAGATCCTAGCCAAAGCCAAGGAAGAGCTCGACACAGTCGTGGGCCCAAACCGACTTGTAACCGAGACGGACCTGGCCCAGCTAACCTACCTTCAGGCAATCATTAAAGAAACCTTCCGGCTCCACCCCTCCACCCCACTCTCTCTCCCACGTATGTCAGCGGAGAGTTGCGAGATCAACGGCTACCATATTCCCAAGGGCTCGACCCTTCTTGTTAATGTATGGGCCATAGCCCGTGACCCAGAGGCTTGGTCCGACCCACTAGAATTCCGGCCCGAGAGATTCTTACCCGGGGGCGAAAAGCCCAATGCTGATGTGAGAGGAAATGATTTTGAAGTTATTCCGTTTGGGTCGGGACGAAGAATTTGTGCTGGGATGAGCCTAGGTTTACGCATGGTCCAGTTAATGACCGCGACACTGGTGCATGCGTTTAATTTCGAGTTGCCAGAGGGTGAATTAGCTGAAAAGCTCAATATGGAGGAAGCATATGGGTTGACCTTACAACGAGCCACACCGTTGATGGTGCACCCACGGCCCAGGTTGGGACCTAATGTATTCAAGGCATAA

Network for GWHGAAZE030679

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	38	502	7.50E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05280	CYP75B1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941
		Flavone and flavonol biosynthesis	map00944

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	molecular_function	iron ion binding
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.358
	SRR3591706	second leaf	101.311
	SRR3591707	mature leaf	17.223
	SRR3591708	Shoot apex	130.160
	SRR3591709	Stem	282.425
	SRR3591710	White floral bud	31.343
	SRR3591711	White flower	17.932
	SRR3591712	Green floral bud	72.055
	SRR3591713	Yellow flower	13.141
SRP173429	SRR8316895	Juvenile bud stage	165.969
	SRR8316896	Juvenile bud stage	118.332
	SRR8316897	Juvenile bud stage	51.327
	SRR8316894	Third green stage	35.035
	SRR8316900	Third green stage	85.198
	SRR8316901	Third green stage	82.884
	SRR8316898	Complete white stage	15.177
	SRR8316899	Complete white stage	100.017
	SRR8316903	Complete white stage	26.991
	SRR8316902	Silver flowering stage	3.669
	SRR8316904	Silver flowering stage	3.183
	SRR8316905	Silver flowering stage	0.632
	SRR8316906	Gold flowering stage	2.857
	SRR8316907	Gold flowering stage	3.379
	SRR8316908	Gold flowering stage	14.934
SRP132670	SRR6706286	Control	73.146
	SRR6706287	Light intensity 50%	81.234
	SRR6706288	Light intensity 20%	82.479
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	94.340
	CNS0095593	Slightly white alabastrum(diploid) 2	59.118
	CNS0095594	Slightly white alabastrum(diploid) 3	101.257
	CNS0095595	Whole white alabastrum(diploid) 2	50.646
	CNS0095596	Whole white alabastrum(diploid) 3	21.345
	CNS0095597	Whole white alabastrum(diploid) 4	39.439
	CNS0095598	Silvery flower (diploied) 1	51.694
	CNS0095599	Silvery flower (diploied) 2	52.422
	CNS0095600	Silvery flower (diploied) 3	21.841
	CNS0095601	Golden flower (diploid) 1	58.393
	CNS0095602	Golden flower (diploid) 2	29.018
	CNS0095603	Golden flower (diploid) 3	29.086
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.908
	CNS0095606	Slightly white alabastrum(tetraploid) 3	127.693
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.404
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.188
	CNS0095610	Silvery flower (tetraploid) 1	3.983
	CNS0095611	Silvery flower (tetraploid) 2	8.599
	CNS0095612	Silvery flower (tetraploid) 3	6.168
	CNS0095613	Golden flower (tetraploid) 1	8.057
	CNS0095614	Golden flower (tetraploid) 2	5.224
	CNS0095615	Golden flower (tetraploid) 3	0.953
CRA001975	CRR073297	Stem 1	171.138
	CRR073298	Stem 2	118.835
	CRR073299	Stem 3	118.462
	CRR073300	Leaf 1	76.561
	CRR073301	Leaf 2	96.096
	CRR073302	Leaf 3	90.230
	CRR073303	Juvenile bud 1	61.026
	CRR073304	Juvenile bud 2	31.886
	CRR073305	Juvenile bud 3	67.719
	CRR073306	Third green 1	3.145
	CRR073307	Third green 2	2.920
	CRR073308	Third green 3	4.493
	CRR073309	Second white 1	2.529
	CRR073310	Second white 2	1.568
	CRR073311	Second white 3	0.943
	CRR073312	Silver flowering 1	1.101
	CRR073313	Silver flowering 2	2.068
	CRR073314	Silver flowering 3	1.577
	CRR073315	Gold flowering 1	21.997
	CRR073316	Gold flowering 2	17.523
	CRR073317	Gold flowering 3	24.661
	CRR073318	Tawny withering 1	35.399
	CRR073319	Tawny withering 2	60.840
	CRR073320	Tawny withering 3	37.975