Gene detail

Detail information of GWHGAAZE030696

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010663055.1	PREDICTED: lysine-specific demethylase REF6 [Vitis vinifera]
Swissprot	tr\|Q9STM3\|REF6_ARATH	Lysine-specific demethylase REF6
trEMBL	tr\|F6GTM2\|F6GTM2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB42906.1}
TAIR10	AT3G48430.1	relative of early flowering 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47367285	47374303	+
GWHAAZE00000009	mRNA	47367285	47374303	+
GWHAAZE00000009	exon	47367285	47368122	+
GWHAAZE00000009	exon	47369880	47369958	+
GWHAAZE00000009	exon	47370395	47370462	+
GWHAAZE00000009	exon	47370588	47370738	+
GWHAAZE00000009	exon	47371134	47371822	+
GWHAAZE00000009	exon	47372030	47372713	+
GWHAAZE00000009	exon	47373024	47374303	+
GWHAAZE00000009	CDS	47367285	47368122	+
GWHAAZE00000009	CDS	47369880	47369958	+
GWHAAZE00000009	CDS	47370395	47370462	+
GWHAAZE00000009	CDS	47370588	47370738	+
GWHAAZE00000009	CDS	47371134	47371822	+
GWHAAZE00000009	CDS	47372030	47372713	+
GWHAAZE00000009	CDS	47373024	47374303	+

Transcript Sequence
>GWHTAAZE030730 ATGGCATCGTCTAACAGTGTAGAGGTGTTTCCATGGCTGAAAACCCTACCTGTAGCACCAGAGTACCACCCAACCCTAGCTGAATTCCAAGATCCAATTGGCTACATTTTTAAGATCGAGAAAGAAGCTTCCAAGTATGGTATCTGCAAAATCGTTCCCCCTGTCCAGCCTCCTCCCAAGAAGACCGCAATTGCCAACCTCAACCGCTCCCTCGCTGCTCGCTCCACTACCTCCAACCCTAAATCAATGCCCACATTCACCACTCGCCAGCAGCAGATCGGCTTCTGTCCTCGAAAACACCGCCCCGTGCAGAAACCTGTCTGGCAGAGTGGCGAGACCTACACTCTCCCTCAATTCGAGGCTAAGGCCAAGTTATTCGAGAAGAATTATTTGAAGAAGAACGCTAAGAAGCCTTTAACTCCTCTCGAAATTGAGACTCTCTACTGGAAGGCTACTGTCGATAAGCCTTTCTCGGTTGAGTATGCCAACGATATGCCTGGTTCTGCATTCGCCCAGATGAGTACCAAGAAGAGTAGGGAAGCTGGGGAGGCTGCTACTGTGGGTGAAACTGCGTGGAACATGAGGGGGGTTTCTAGGGCTAAAGGTTCGTTGTTGAGATTTATGAAGGAGGAAATACCCGGGGTTACCTCCCCAATGGTCTATGTTGCTATGATGTTTAGCTGGTTCGCTTGGCATGTTGAGGATCATGATTTGCATAGCTTGAATTACATGCATATGGGGGCAGGGAAGACTTGGTACGGGGTGCCGAGGGAAGCGGCTGTTGCTTTTGAGGAGGTTATTAGGGTTCAGGGCTATGGAGGGGAGATCAACCCTATTGTGACTTTTGCTACTCTTGGTGAGAAGACCACGGTCATGTCACCAGAAGTACTTCTTAGTGCTGGGGTTCCATGCTGCAGGTTGGTGCAAAATGCTGGAGAATTTGTGGTCACTTTTCCAAGAGCCTACCATTCTGGGTTTAGTCATGGGTTTAATTGTGGGGAGGCAGCTAATATTGCAACTCCTGAATGGTTGAGGGTTGCAAAAGATGCTGCAGTTCGCCGGGCTTCAATTAATTGTCCTCCCATGGTGTCTCATTTCCAGTTGCTTTATGATCTTGCATTATCATTATCCTCGAGAATGCCCACGAGCATCAGTCATCAACCCCGTAGTTCTCGACTAAAGGATAAGAAGAAGGGCGAAGGGGAGGCCTTAGTGAAAGAGCTATTTGTGCAGGATGTAATACAAAATAATGACCTGTTTCATATTCTTGGTAAAGGATCCCCAATTATACTTCTTCCCCGAATTTCTTTTGAAAAATTGGGTTCATCAACTTCACGCATTGGGTCTGAATTAAAAGTAAATCCTAGACCTTCATTCGGTTTACGCAGTCTACAAGGTAAAATGAAAACCACAGAAAGTTTAATTTCTGATGGTGGTGTGGTTCTAGACGGGAAGCAGCAGGGGGTCAAGCAGTTCACGGGTTTCAATTTGATGAAGGGAAAGTTTTCTTCATTGTCTGCTGGGAACAGGGTTTCCTTGTTTGGGGGTAGTCATGATACAAGCCAGTACACCAACAGTGATAGAGGAACTGCTCAATATGATAGATTGCCAGACCGAGGACTGTTCTCGTGTGTAACTTGTGGAATTTTGTGCTTTGCTGGTGTTGCAATTATTCAACCTAGAGAGGCTGCTGCACGTTACCTGATGTCGGCTGATTGTAGCTATTTTAATGATTGGGTTGTTGGTTCTGGAGTAACAACTAATGATGGTTTTGCTGATGTCAGTGATGATGTGGTGGATGCTGCTGAGCTCATTTCGTGTTCAGGATTAATGAAAAAGAATACGCCCGATGGTTTATTTGATGTCCCAATACAATCTGCTGACCGAATTCAAAGAATAGATGAAAGTGCAGGAGTGACATCACATACTAGAACACACAGAGACACTTCTTCCCTCGGCCTTTTGGCCTTGAATTACGGTGATTCTTCTGACGAAGAGGAAGATCAAGCTGAAGCAGATATTCCTGTTAGTAGTGACGAAACCAATTCTCGAGAGTTTTCTCCTGTAAGTAGGCTTGATAGTGATGATAGTCGATCTCCTTCCCTAGATCATTATAGTGAGGATGAAGTTCCTCTCCATGAAGCTGATCCTTATGAGGAGCATGAACGCTCAAGAACTGAATTTAAACACAGAAATCGTCAAGCTGTTGACTGTTCCATTGAGTTTGAAACCAATGATCTTTCAATGGAGTCAAATAGTTTAGCGGGTAGGTTTGGAAATCAAATGAAATCGCCCCGTTATGCGTCAAATTGTTCGTCTGTTGCACACGAGGATGATGCAATTATTGGCAATGCGGTAGTACCAATTGAGAACTCAACTATGTCATTTCCCCCAAGATCTGATGAAGATTCTTCAAGAATGCATGTCTTTTGCCTTCAGCACGCTGTTGAAGTAGAGCAGCAGCTGCGGCCAATTGGCGGGGTGAATATGTTGCTCCTTTGTCATCCAGACTATCCCGAGCTTGAGGCTGAAGCAAAATCAGTGGCAGAAGAACTGGGATCTCATCATCTATGGAGCAAAATTGAGTTCAGGGATGCCAATGAGGAAGACAAAGAGAGGATACAATCAGCACTAGATAGCGAGGAAGCCATACATGGTAATGGGGACTGGGCTGTGAAGCTAGGGATTAATCTTTTCTACAGTGCCAACCTTAGCCGCTCCCCACTTTACAGCAAGCAAATGCCATACAACTCGGTTATATATGATGCCTTTGGACGCAGTTCTCCGGCTAATACCCCAACAAAGCCCAAGGGATCAGGCAAGCAGAAAAAAATAGTTGTTGCTGGTAAATGGTGTGGGAAAGTTTGGATGTCGAATCAGGTTCACCCTTTGCTTGTACAAAGGGATCCGGAGGAACAAGAAGTAGAGAGAAATCTCCCCGCTCCATCAAAGCCTGATGTGAAGCTTGAGAGACCGTCACAAAGGACCCATATTGGAAATAAGAGGAAGAATATGGTAGAAAGTACATCAACAGTAAAAGCTAAAGACCCTAAAGTAGAAGAACCGGTTGAAGATTCAGATGATTCACCAGAGGATAATTCTCATCTGCAGTACAGGAGAAATCTTAGAAACAAGAGAATGAAAACAGAAACCCCTAAGCCTCTACGGAATAGTTTTGCACGGACTTCTAAAAAGGTTGTCGACTCGTATGTTGAGGATGAGCTGGAAGGCGGACCTAGTACTCGTCTGAGGAAAAGAACTGCAAAGCCCGTTAAAGAGATCGAAACCAAACCAGTTGAAGCCAAATCATCAGTAAAAAAGCTGCAGAACATTAACAAGAATGCGAAGAAAGCTTTGGGCACAAGGGCCCCATCTGGCCATGGCAATTTGAGGATAAGGGATGAGGCCCATGAGGAGGAGGGTGAGTACTGTTGTGAGATGGAGGGTTGCACCATGAGTTTTGGGTCGAAACAAGAGCTTGTGCTGCACAAGCGAAACATATGTCCGGTCAAAGGGTGTGGAAAGAAGTTCTTTTCGCACAAGTATCTGGTGCAGCACCGGCGGGTCCACATGGATGACCGCCCACTCAAGTGCCCGTGGAAAGGTTGCAGGATGACGTTCAAGTGGGCGTGGGCCCGGACCGAACACATTAGGGTTCATACTGGTGCTCGTCCTTATGCATGCACTGAGGCAGGTTGTGGACAGACGTTCCGGTTTGTGTCAGATTTCAGTCGTCATAAGAGGAAGACCGGTCATTCCACAAAGAAGGGCAAGGGTAGCAGCAGGTAA

Network for GWHGAAZE030696

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02375.18	JmjN	20	53	4.40E-14
PF02373.23	JmjC	219	337	7.10E-37

Protein Sequence

>GWHPAAZE030714
MASSNSVEVFPWLKTLPVAPEYHPTLAEFQDPIGYIFKIEKEASKYGICKIVPPVQPPPKKTAIANLNRSLAARSTTSNPKSMPTFTTRQQQIGFCPRKHRPVQKPVWQSGETYTLPQFEAKAKLFEKNYLKKNAKKPLTPLEIETLYWKATVDKPFSVEYANDMPGSAFAQMSTKKSREAGEAATVGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYMHMGAGKTWYGVPREAAVAFEEVIRVQGYGGEINPIVTFATLGEKTTVMSPEVLLSAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAVRRASINCPPMVSHFQLLYDLALSLSSRMPTSISHQPRSSRLKDKKKGEGEALVKELFVQDVIQNNDLFHILGKGSPIILLPRISFEKLGSSTSRIGSELKVNPRPSFGLRSLQGKMKTTESLISDGGVVLDGKQQGVKQFTGFNLMKGKFSSLSAGNRVSLFGGSHDTSQYTNSDRGTAQYDRLPDRGLFSCVTCGILCFAGVAIIQPREAAARYLMSADCSYFNDWVVGSGVTTNDGFADVSDDVVDAAELISCSGLMKKNTPDGLFDVPIQSADRIQRIDESAGVTSHTRTHRDTSSLGLLALNYGDSSDEEEDQAEADIPVSSDETNSREFSPVSRLDSDDSRSPSLDHYSEDEVPLHEADPYEEHERSRTEFKHRNRQAVDCSIEFETNDLSMESNSLAGRFGNQMKSPRYASNCSSVAHEDDAIIGNAVVPIENSTMSFPPRSDEDSSRMHVFCLQHAVEVEQQLRPIGGVNMLLLCHPDYPELEAEAKSVAEELGSHHLWSKIEFRDANEEDKERIQSALDSEEAIHGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYDAFGRSSPANTPTKPKGSGKQKKIVVAGKWCGKVWMSNQVHPLLVQRDPEEQEVERNLPAPSKPDVKLERPSQRTHIGNKRKNMVESTSTVKAKDPKVEEPVEDSDDSPEDNSHLQYRRNLRNKRMKTETPKPLRNSFARTSKKVVDSYVEDELEGGPSTRLRKRTAKPVKEIETKPVEAKSSVKKLQNINKNAKKALGTRAPSGHGNLRIRDEAHEEEGEYCCEMEGCTMSFGSKQELVLHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCRMTFKWAWARTEHIRVHTGARPYACTEAGCGQTFRFVSDFSRHKRKTGHSTKKGKGSSR

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.586
	SRR3591706	second leaf	8.568
	SRR3591707	mature leaf	6.356
	SRR3591708	Shoot apex	15.957
	SRR3591709	Stem	9.148
	SRR3591710	White floral bud	7.804
	SRR3591711	White flower	9.510
	SRR3591712	Green floral bud	9.034
	SRR3591713	Yellow flower	5.739
SRP173429	SRR8316895	Juvenile bud stage	6.733
	SRR8316896	Juvenile bud stage	7.888
	SRR8316897	Juvenile bud stage	3.670
	SRR8316894	Third green stage	3.855
	SRR8316900	Third green stage	8.278
	SRR8316901	Third green stage	9.424
	SRR8316898	Complete white stage	3.096
	SRR8316899	Complete white stage	8.684
	SRR8316903	Complete white stage	4.329
	SRR8316902	Silver flowering stage	2.633
	SRR8316904	Silver flowering stage	3.737
	SRR8316905	Silver flowering stage	1.583
	SRR8316906	Gold flowering stage	5.160
	SRR8316907	Gold flowering stage	5.174
	SRR8316908	Gold flowering stage	5.186
SRP132670	SRR6706286	Control	8.594
	SRR6706287	Light intensity 50%	8.809
	SRR6706288	Light intensity 20%	9.502
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.080
	CNS0095593	Slightly white alabastrum(diploid) 2	6.743
	CNS0095594	Slightly white alabastrum(diploid) 3	6.828
	CNS0095595	Whole white alabastrum(diploid) 2	5.455
	CNS0095596	Whole white alabastrum(diploid) 3	3.892
	CNS0095597	Whole white alabastrum(diploid) 4	4.913
	CNS0095598	Silvery flower (diploied) 1	10.020
	CNS0095599	Silvery flower (diploied) 2	6.789
	CNS0095600	Silvery flower (diploied) 3	8.273
	CNS0095601	Golden flower (diploid) 1	7.092
	CNS0095602	Golden flower (diploid) 2	8.271
	CNS0095603	Golden flower (diploid) 3	8.612
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.233
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.048
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.613
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.458
	CNS0095610	Silvery flower (tetraploid) 1	8.090
	CNS0095611	Silvery flower (tetraploid) 2	7.889
	CNS0095612	Silvery flower (tetraploid) 3	4.936
	CNS0095613	Golden flower (tetraploid) 1	3.522
	CNS0095614	Golden flower (tetraploid) 2	6.790
	CNS0095615	Golden flower (tetraploid) 3	3.133
CRA001975	CRR073297	Stem 1	19.760
	CRR073298	Stem 2	17.906
	CRR073299	Stem 3	16.547
	CRR073300	Leaf 1	13.108
	CRR073301	Leaf 2	14.471
	CRR073302	Leaf 3	8.984
	CRR073303	Juvenile bud 1	8.940
	CRR073304	Juvenile bud 2	6.361
	CRR073305	Juvenile bud 3	13.151
	CRR073306	Third green 1	2.051
	CRR073307	Third green 2	1.119
	CRR073308	Third green 3	2.661
	CRR073309	Second white 1	1.909
	CRR073310	Second white 2	1.328
	CRR073311	Second white 3	1.932
	CRR073312	Silver flowering 1	2.199
	CRR073313	Silver flowering 2	2.574
	CRR073314	Silver flowering 3	1.382
	CRR073315	Gold flowering 1	8.892
	CRR073316	Gold flowering 2	11.248
	CRR073317	Gold flowering 3	7.159
	CRR073318	Tawny withering 1	12.892
	CRR073319	Tawny withering 2	9.669
	CRR073320	Tawny withering 3	10.191