Gene detail

Detail information of GWHGAAZE030710

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010663034.1	PREDICTED: telomere length regulation protein TEL2 homolog isoform X1 [Vitis vinifera]
trEMBL	tr\|F6GSG3\|F6GSG3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB42891.1}
TAIR10	AT3G48470.1	embryo defective 2423

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47503540	47510471	+
GWHAAZE00000009	mRNA	47503540	47510471	+
GWHAAZE00000009	exon	47503540	47503714	+
GWHAAZE00000009	exon	47503824	47503852	+
GWHAAZE00000009	exon	47503940	47504042	+
GWHAAZE00000009	exon	47504596	47504770	+
GWHAAZE00000009	exon	47505577	47505762	+
GWHAAZE00000009	exon	47505851	47505887	+
GWHAAZE00000009	exon	47506015	47506180	+
GWHAAZE00000009	exon	47506680	47506956	+
GWHAAZE00000009	exon	47507179	47507393	+
GWHAAZE00000009	exon	47507621	47507740	+
GWHAAZE00000009	exon	47507841	47508349	+
GWHAAZE00000009	exon	47508458	47509224	+
GWHAAZE00000009	exon	47509957	47510155	+
GWHAAZE00000009	exon	47510310	47510471	+
GWHAAZE00000009	CDS	47503540	47503714	+
GWHAAZE00000009	CDS	47503824	47503852	+
GWHAAZE00000009	CDS	47503940	47504042	+
GWHAAZE00000009	CDS	47504596	47504770	+
GWHAAZE00000009	CDS	47505577	47505762	+
GWHAAZE00000009	CDS	47505851	47505887	+
GWHAAZE00000009	CDS	47506015	47506180	+
GWHAAZE00000009	CDS	47506680	47506956	+
GWHAAZE00000009	CDS	47507179	47507393	+
GWHAAZE00000009	CDS	47507621	47507740	+
GWHAAZE00000009	CDS	47507841	47508349	+
GWHAAZE00000009	CDS	47508458	47509224	+
GWHAAZE00000009	CDS	47509957	47510155	+
GWHAAZE00000009	CDS	47510310	47510471	+

Transcript Sequence
>GWHTAAZE030744 ATGGGAGGTGAAGATCCGAAGAAGAAGAAGATGAGAGAAATGGAAACAGCAATATTAGAGAAGCTCGGTAGCGTAATCGCCTCCATAGACGAGGCCAAACATGTCGACCAACTCATCTGCACCCTCCACTCTCTCGCCATCCTCCTCTTCCCCATCGACTCTCACGCCATTTCAGGCGTTGTTGATAAGCGGTACAGAGAAGAGGTACTTGGTGCCGAAGTTCCTTCTACAGAGGAGAGGGATAATTGGTGGCGGGTGTTTTACGGAGGAACTGCATTTCCTACACTGGCTAGAGTCTTGTTGTATGAAGTTGCTCCCAATTGGCTACCTTGCTTCCCAATTTCCGCAAGGAGACATGTCTACGACGTATTTTTTGTCAATGGGCATGCCACTGAGGTTGTTCAGACTTTAGTCCCATGTCTACATCAAAATGCAAATGGTTGTAGCCTTGAGAGTAGTCCTTCCTGCTCAAATGCTGAGAGATTAATTGCACTTTGCTTGCTTGAAAAAGATGGGGTATTCCAGATAGCTCGAGAATTTGCCTGTTCTTGTCAATCTGAAGATACGAGCAATGAAAAGCTCAAGCCAGTTATTTCTAGGGTGGCACAGCTTGTTACATCTATTCCTGATAAAGCACAATTGCGAGCCCCAGCTTCCCTTTCATCACAGTTTAGATGCTGCATGTTTGACTTGTCTGGATATTATTCTCTCAGTCTGTTCTTTAAGCAGATTACGATTCAACTTCTTGCTGGTTTAGAAGATTGGGACAGGACTTTATGTGATGGAGATATCTTCAATACAAATGAAATTCATGGTACCATCATATTTGTTGGGGAAGCATTTGCTCGCATTTGTCGGCGAGGGTCTGCAGATGTGCTGCTTAGTGAATTGCTCCCGCAGATTCTTAATCGTGTTAGAAGCTTCTTATTGGCAAAGACCGATTTGGTTGTTAGCGAAGCATTTGAGTCGAAGCCTGGTTTCCGGTTCTGGTTAAAGATGATGGAAGCAATTAAAGACCCCTATGCCATGGAAAGAATGTCTGAACAGCTATTGCATCAGCTAGCAGCTCAAAATGCAAGTGACGTTGAGGCTTACTGGATTTTTTGGATATTGTTTCAGCGGAGCTATCATCGTCAAACATCAATTAGGGCCATGTTTGTTGAAAAGTTTTTGCTTTGGAAAGTATTTCCTGTTCGTTGCCTAAGGTGGATTGTTCAGTTTGCTGTTCTTGAATGCCCTCCTAATACTGCTTCCAAGATGAAAGATCATAATACTCGTGGTCTATTGGAAGCAGTGCAGCGTCTTTTAGTAGTATGGTCCAAACGGGAGTTTGTTCAGTCAGCTCCAATAGAGCAGCAAGCTTGGTCCTTAATAGAAGATTCAGATGTAACTGCTGCCATAGGCCTTCTGCTGGAGAAGATGTCAAAAGAAGATTTAGATGCAACTAAGGATGGAATGCACTCAATTCTTCAAGGAGTTAGCTGTAGACTGGAATATCCGTCCCTCTTGATTCGCAAAATGGCTAGCGCTGTTGCTTTAGCATTTTCTAAAGTAATTGACCCAAAAAATCCTTTGTATCTGGATGATGATTGCAGTGAAGAGAATATTGACTGGGAGTTTGGGTTAGCAACATCTGAAAGAGGGGCCACTGGAAAGGATATTAGTGAAGTTAGAGAGTGTACTACCTCAGTACCAATAGAGGAACTTAAGTGCATAGCTGACAGTGAGATGCACAGTAATGTGAAGGGTCGAAAGAAAAAAGTATCGGAATTTAAGTTAATAGATCCCGATGAGGTTATTGATATTGTGACATTGAATATTGAGTCTGTTTCTGATGAAGATGATGATGATGCTAGTGAAAATTCTGAAACCTCGAGCGAATCTTCCTTGCAGCCATATGACTTAACAGATGATGACACAGATTTGAAGAGAAAATTTTCACATTTGGTTGATGTCATTGGAGCATTAAGAAAATCTGACGATGTGGATGGTGTTGAAAGGGCTCTTGATGTTGTCGAGAAGCTTGTTCGAGCATCGCCAGACGAACTTAGGTTTGTAGCTGGTGATCTAGTCCGAACTCTTGTACAGGTTCGTTGCTCTGATTCAACTATAGAAGGGGAAGAAGAATCAGCTGAAGAAAAGAGGCAAAAAGCACTGGTTGCGTTGATTGTCACCTGTCCTTTCGAATCTGTTGATACTTTAAATAAACTATTATATTCACCTACGGTGGATATCAGCCAGCGGATTTTGATTCTCGACGTAATGACTGATGGAGCACAAGAACTTGCCGAAACAAGAACCACAAAACCAAACCCACCTAGAGCCCTCATATCGACCATTTCAGAGACTCAACCATGGTTCATGCCCAGTAGCATAGGACCACCTGGAGCAGGCACCTGGAAAGAGATTCCAGGAACTTTAACTCCGTTGAATTTATCTTACTCTTATGAGAGAGAACTCCCTACCAAACTGGGTCAAATCAAGAAAGGAAAAACGCAGCGATGGAGCCTCAGATCAGAAAATAGGCAAGAAAATCAGCTGGAAATTTCTCAGAATACGTTTCCTCAATATGCAGCTGCTTTTATGCTTCCAGCCATGCTGGGATTTGATAAGAAAATTCAAGGCATTGACTTGCTTGGTAGGGATTTTGTTGTTCTGGGGAAACTTATCTACATGCTTGGTGTTTGTATGAAGTGTGCAGTTCACCATCCAGAAGCATCTGCTTTGGCTCTTCCCCTCCTCGATATGTTAAGCACTAGGGAGGTATGCCATCACGCGGAAGCGTATGTTAGAAGATCTGTACTTTTTGCAGCTTCATGCATATTGGTGGCCCTTCATCCCTCTTATATAGCATCTGCCTTGCTCGAAGGAAACCCTCAACTTTCAAAAGGACTAGAGTGGGTTCGTACATGGGCCCTTCATGTAGCCGAGTCGGATACGGATAAAGATTGCTACACGCTCGCTATGACATGCCTACAACTCCATAGTGAGATGGCCCTCCAAGCTTCGCGTGCATTAGAGTTGGGAGAAAATATGTTAGAACAAAAGGGCGTCCGTATGCCTTCAAATCTTTCAAAGGGTACAATTAGCATCCCCATCTCAAATTTTGAAAAATATTAG

Network for GWHGAAZE030710

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10193.10	Telomere_reg-2	648	759	1.20E-23

Protein Sequence

>GWHPAAZE030728
MGGEDPKKKKMREMETAILEKLGSVIASIDEAKHVDQLICTLHSLAILLFPIDSHAISGVVDKRYREEVLGAEVPSTEERDNWWRVFYGGTAFPTLARVLLYEVAPNWLPCFPISARRHVYDVFFVNGHATEVVQTLVPCLHQNANGCSLESSPSCSNAERLIALCLLEKDGVFQIAREFACSCQSEDTSNEKLKPVISRVAQLVTSIPDKAQLRAPASLSSQFRCCMFDLSGYYSLSLFFKQITIQLLAGLEDWDRTLCDGDIFNTNEIHGTIIFVGEAFARICRRGSADVLLSELLPQILNRVRSFLLAKTDLVVSEAFESKPGFRFWLKMMEAIKDPYAMERMSEQLLHQLAAQNASDVEAYWIFWILFQRSYHRQTSIRAMFVEKFLLWKVFPVRCLRWIVQFAVLECPPNTASKMKDHNTRGLLEAVQRLLVVWSKREFVQSAPIEQQAWSLIEDSDVTAAIGLLLEKMSKEDLDATKDGMHSILQGVSCRLEYPSLLIRKMASAVALAFSKVIDPKNPLYLDDDCSEENIDWEFGLATSERGATGKDISEVRECTTSVPIEELKCIADSEMHSNVKGRKKKVSEFKLIDPDEVIDIVTLNIESVSDEDDDDASENSETSSESSLQPYDLTDDDTDLKRKFSHLVDVIGALRKSDDVDGVERALDVVEKLVRASPDELRFVAGDLVRTLVQVRCSDSTIEGEEESAEEKRQKALVALIVTCPFESVDTLNKLLYSPTVDISQRILILDVMTDGAQELAETRTTKPNPPRALISTISETQPWFMPSSIGPPGAGTWKEIPGTLTPLNLSYSYERELPTKLGQIKKGKTQRWSLRSENRQENQLEISQNTFPQYAAAFMLPAMLGFDKKIQGIDLLGRDFVVLGKLIYMLGVCMKCAVHHPEASALALPLLDMLSTREVCHHAEAYVRRSVLFAASCILVALHPSYIASALLEGNPQLSKGLEWVRTWALHVAESDTDKDCYTLAMTCLQLHSEMALQASRALELGENMLEQKGVRMPSNLSKGTISIPISNFEKY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11137	TELO2, TEL2	Fanconi anemia pathway	map03460
K11137	TELO2, TEL2	mTOR signaling pathway	map04150

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.549
	SRR3591706	second leaf	10.686
	SRR3591707	mature leaf	13.148
	SRR3591708	Shoot apex	20.341
	SRR3591709	Stem	21.813
	SRR3591710	White floral bud	19.346
	SRR3591711	White flower	24.782
	SRR3591712	Green floral bud	15.623
	SRR3591713	Yellow flower	21.627
SRP173429	SRR8316895	Juvenile bud stage	10.058
	SRR8316896	Juvenile bud stage	14.882
	SRR8316897	Juvenile bud stage	5.701
	SRR8316894	Third green stage	5.731
	SRR8316900	Third green stage	13.223
	SRR8316901	Third green stage	12.362
	SRR8316898	Complete white stage	5.533
	SRR8316899	Complete white stage	19.457
	SRR8316903	Complete white stage	9.641
	SRR8316902	Silver flowering stage	6.979
	SRR8316904	Silver flowering stage	9.926
	SRR8316905	Silver flowering stage	4.182
	SRR8316906	Gold flowering stage	16.917
	SRR8316907	Gold flowering stage	17.077
	SRR8316908	Gold flowering stage	15.903
SRP132670	SRR6706286	Control	8.546
	SRR6706287	Light intensity 50%	8.543
	SRR6706288	Light intensity 20%	9.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.427
	CNS0095593	Slightly white alabastrum(diploid) 2	9.281
	CNS0095594	Slightly white alabastrum(diploid) 3	9.821
	CNS0095595	Whole white alabastrum(diploid) 2	8.377
	CNS0095596	Whole white alabastrum(diploid) 3	7.148
	CNS0095597	Whole white alabastrum(diploid) 4	7.271
	CNS0095598	Silvery flower (diploied) 1	13.474
	CNS0095599	Silvery flower (diploied) 2	10.068
	CNS0095600	Silvery flower (diploied) 3	17.110
	CNS0095601	Golden flower (diploid) 1	11.191
	CNS0095602	Golden flower (diploid) 2	18.837
	CNS0095603	Golden flower (diploid) 3	15.927
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.227
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.084
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.350
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.854
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.241
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.430
	CNS0095610	Silvery flower (tetraploid) 1	17.578
	CNS0095611	Silvery flower (tetraploid) 2	19.320
	CNS0095612	Silvery flower (tetraploid) 3	17.988
	CNS0095613	Golden flower (tetraploid) 1	10.627
	CNS0095614	Golden flower (tetraploid) 2	16.537
	CNS0095615	Golden flower (tetraploid) 3	15.469
CRA001975	CRR073297	Stem 1	13.844
	CRR073298	Stem 2	12.357
	CRR073299	Stem 3	9.169
	CRR073300	Leaf 1	12.660
	CRR073301	Leaf 2	10.608
	CRR073302	Leaf 3	8.169
	CRR073303	Juvenile bud 1	7.479
	CRR073304	Juvenile bud 2	4.220
	CRR073305	Juvenile bud 3	11.274
	CRR073306	Third green 1	1.845
	CRR073307	Third green 2	2.302
	CRR073308	Third green 3	2.672
	CRR073309	Second white 1	6.424
	CRR073310	Second white 2	7.945
	CRR073311	Second white 3	9.336
	CRR073312	Silver flowering 1	7.493
	CRR073313	Silver flowering 2	9.547
	CRR073314	Silver flowering 3	6.192
	CRR073315	Gold flowering 1	4.958
	CRR073316	Gold flowering 2	9.923
	CRR073317	Gold flowering 3	4.670
	CRR073318	Tawny withering 1	9.715
	CRR073319	Tawny withering 2	7.819
	CRR073320	Tawny withering 3	8.223