Gene detail

Detail information of GWHGAAZE030711

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007209234.1	hypothetical protein PRUPE_ppa006999mg [Prunus persica]
Swissprot	tr\|Q93Y35\|PSMD6_ARATH	26S proteasome non-ATPase regulatory subunit 6 homolog
trEMBL	tr\|M5WMC9\|M5WMC9_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10433.1}
TAIR10	AT4G24820.2	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47513741	47517348	+
GWHAAZE00000009	mRNA	47513741	47517348	+
GWHAAZE00000009	exon	47513741	47513876	+
GWHAAZE00000009	exon	47513976	47514090	+
GWHAAZE00000009	exon	47514750	47514840	+
GWHAAZE00000009	exon	47514926	47515071	+
GWHAAZE00000009	exon	47515362	47515581	+
GWHAAZE00000009	exon	47515720	47515828	+
GWHAAZE00000009	exon	47516904	47517072	+
GWHAAZE00000009	exon	47517174	47517348	+
GWHAAZE00000009	CDS	47513741	47513876	+
GWHAAZE00000009	CDS	47513976	47514090	+
GWHAAZE00000009	CDS	47514750	47514840	+
GWHAAZE00000009	CDS	47514926	47515071	+
GWHAAZE00000009	CDS	47515362	47515581	+
GWHAAZE00000009	CDS	47515720	47515828	+
GWHAAZE00000009	CDS	47516904	47517072	+
GWHAAZE00000009	CDS	47517174	47517348	+

Transcript Sequence
>GWHTAAZE030745 ATGGAAGGTGAAGAAGGAAAACAGCAACCTCACCTTGTGCTCGCCCACAAGCTATTCCACCTCACACACCCTGACGTCGAAGATATCGACAAAGTTCGCTTCCGGGAAGAGGTCTTGTCCTTCGTCCTCGCCGATGATATGGCTCCATTATACGAAACCCTAGCCACCAATTCGGTGTTGAGCATCGATCAGAACGTTCTGGATTCGATGCGTGCTAAGAACCAAGAAGAACTCAAGAAGCTCGACGAAAAGATTACTGATGCTGAGGAAAACTTGGGTGAAAGTGAAGTTCGAGAAGCTCATTTAGCTAAATCTTTATATTATATCCAAATTGGTGACAAGGAGAAGGCACTGGAACAACTCAAGTTAACGGAGAGCAAAACAGTTGCAGTTGGGCAGAAGATGGACTTGGTGTTCTATACACTGCAGATTGGTTTTTTCCACATGGATTTTGATCTTATTTCCAAAAGCATTGATAAAGCGAAGAGCTTGTTTGAGGAGGGAGGTGACTGGGAAAGGAAGAATCGCTTGAAGGTGTATGAAGGCTTGTACTGCATGTCCACTCGTAACTTTAAGCAGGCAGCTGATCTTTTCCTTGATTCTATTTCAACTTTCACAACATATGAGCTTTTCTCATATGATACTTTCATATTCTACACTGTCCTTGCAAGCATTATATCATTGGATAGAGTTTCCCTGAAGCAAAAGGTAGTGGATGCTCCTGAGATCCTGACAGTAATTGGAAAAATCCCATACTTGTCAGAGTTTTTGAACTCTCTATATGATTGCCAATATAAATCGTTTTTCTCTGCATTTGCTGGCCTGACAGAACATATAAAGTTGGACCGCTACTTGCATCCCCACTTCCGGTATTACATGAGGGAGATTAGGACCGTTGTTTATTCCCAGTTCCTAGAATCCTACAAGAGCGTTACCATTGAAGCAATGGCAAAGGCATTTGGGGTAACAGTTGATTTCATTGATTTAGAACTATCGCGTTTTATTGCAGCAGGGAAGCTTCATTGCAAGATAGATAAAGTTGCAGGTGTACTAGAAACTAATCGTCCTGATGCAAAGAATGCTCTTTACCAGGCAACCATTAAGCAAGGAGACTTCTTGTTGAACCGGATTCAGAAGCTTTCTCGCGTCATTGATCTTTGA

Network for GWHGAAZE030711

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10602.10	RPN7	63	236	9.60E-61
PF01399.28	PCI	254	354	8.60E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03037	PSMD6, RPN7	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	80.858
	SRR3591706	second leaf	40.587
	SRR3591707	mature leaf	38.142
	SRR3591708	Shoot apex	72.570
	SRR3591709	Stem	70.493
	SRR3591710	White floral bud	67.387
	SRR3591711	White flower	70.649
	SRR3591712	Green floral bud	56.562
	SRR3591713	Yellow flower	58.386
SRP173429	SRR8316895	Juvenile bud stage	56.605
	SRR8316896	Juvenile bud stage	73.139
	SRR8316897	Juvenile bud stage	35.278
	SRR8316894	Third green stage	28.176
	SRR8316900	Third green stage	81.706
	SRR8316901	Third green stage	75.925
	SRR8316898	Complete white stage	37.602
	SRR8316899	Complete white stage	111.824
	SRR8316903	Complete white stage	61.253
	SRR8316902	Silver flowering stage	45.119
	SRR8316904	Silver flowering stage	57.715
	SRR8316905	Silver flowering stage	27.012
	SRR8316906	Gold flowering stage	94.945
	SRR8316907	Gold flowering stage	85.369
	SRR8316908	Gold flowering stage	91.994
SRP132670	SRR6706286	Control	34.825
	SRR6706287	Light intensity 50%	38.360
	SRR6706288	Light intensity 20%	40.939
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.881
	CNS0095593	Slightly white alabastrum(diploid) 2	43.238
	CNS0095594	Slightly white alabastrum(diploid) 3	36.511
	CNS0095595	Whole white alabastrum(diploid) 2	32.633
	CNS0095596	Whole white alabastrum(diploid) 3	29.412
	CNS0095597	Whole white alabastrum(diploid) 4	31.706
	CNS0095598	Silvery flower (diploied) 1	53.591
	CNS0095599	Silvery flower (diploied) 2	49.333
	CNS0095600	Silvery flower (diploied) 3	83.656
	CNS0095601	Golden flower (diploid) 1	42.987
	CNS0095602	Golden flower (diploid) 2	77.457
	CNS0095603	Golden flower (diploid) 3	73.869
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.028
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	81.735
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.834
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.168
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.669
	CNS0095610	Silvery flower (tetraploid) 1	73.476
	CNS0095611	Silvery flower (tetraploid) 2	68.419
	CNS0095612	Silvery flower (tetraploid) 3	61.303
	CNS0095613	Golden flower (tetraploid) 1	42.202
	CNS0095614	Golden flower (tetraploid) 2	64.663
	CNS0095615	Golden flower (tetraploid) 3	60.400
CRA001975	CRR073297	Stem 1	39.835
	CRR073298	Stem 2	41.889
	CRR073299	Stem 3	43.666
	CRR073300	Leaf 1	38.138
	CRR073301	Leaf 2	34.933
	CRR073302	Leaf 3	40.189
	CRR073303	Juvenile bud 1	38.401
	CRR073304	Juvenile bud 2	38.666
	CRR073305	Juvenile bud 3	39.510
	CRR073306	Third green 1	23.253
	CRR073307	Third green 2	23.132
	CRR073308	Third green 3	22.885
	CRR073309	Second white 1	33.488
	CRR073310	Second white 2	34.702
	CRR073311	Second white 3	31.902
	CRR073312	Silver flowering 1	21.320
	CRR073313	Silver flowering 2	18.989
	CRR073314	Silver flowering 3	19.782
	CRR073315	Gold flowering 1	28.530
	CRR073316	Gold flowering 2	34.761
	CRR073317	Gold flowering 3	27.388
	CRR073318	Tawny withering 1	41.068
	CRR073319	Tawny withering 2	36.344
	CRR073320	Tawny withering 3	47.721