Detail information of GWHGAAZE030719


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009595630.10PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana tomentosiformis]
COGYP_007042205.16E-98putative 4-coumarate-CoA ligase 3
Swissprottr|Q84P23|4CLL9_ARATH04-coumarate--CoA ligase-like 9
trEMBLtr|M1B819|M1B819_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400039281}
TAIR10AT5G63380.15E-159AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4763636947640643-
GWHAAZE00000009mRNA4763636947640643-
GWHAAZE00000009exon4763960947640643-
GWHAAZE00000009exon4763812547638314-
GWHAAZE00000009exon4763752647637671-
GWHAAZE00000009exon4763734447637411-
GWHAAZE00000009exon4763698747637093-
GWHAAZE00000009exon4763636947636574-
GWHAAZE00000009CDS4763960947640643-
GWHAAZE00000009CDS4763812547638314-
GWHAAZE00000009CDS4763752647637671-
GWHAAZE00000009CDS4763734447637411-
GWHAAZE00000009CDS4763698747637093-
GWHAAZE00000009CDS4763636947636574-
Transcript Sequence

Network for GWHGAAZE030719

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding614536.60E-93
PF13193.7AMP-binding_C4625657.40E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K019044CL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.836
SRR3591706second leaf23.364
SRR3591707mature leaf16.788
SRR3591708Shoot apex26.022
SRR3591709Stem6.586
SRR3591710White floral bud13.966
SRR3591711White flower13.411
SRR3591712Green floral bud28.906
SRR3591713Yellow flower14.183
SRP173429 SRR8316895Juvenile bud stage 18.005
SRR8316896Juvenile bud stage 41.796
SRR8316897Juvenile bud stage 16.416
SRR8316894Third green stage 12.746
SRR8316900Third green stage 45.369
SRR8316901Third green stage 50.427
SRR8316898Complete white stage 3.310
SRR8316899Complete white stage 12.567
SRR8316903Complete white stage 11.291
SRR8316902Silver flowering stage3.039
SRR8316904Silver flowering stage4.939
SRR8316905Silver flowering stage2.735
SRR8316906Gold flowering stage 13.038
SRR8316907Gold flowering stage 9.358
SRR8316908Gold flowering stage 12.729
SRP132670SRR6706286Control32.642
SRR6706287Light intensity 50%29.905
SRR6706288Light intensity 20%30.047
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.683
CNS0095593Slightly white alabastrum(diploid) 216.608
CNS0095594Slightly white alabastrum(diploid) 320.975
CNS0095595Whole white alabastrum(diploid) 229.033
CNS0095596Whole white alabastrum(diploid) 332.618
CNS0095597Whole white alabastrum(diploid) 424.367
CNS0095598Silvery flower (diploied) 111.373
CNS0095599Silvery flower (diploied) 230.885
CNS0095600Silvery flower (diploied) 318.807
CNS0095601Golden flower (diploid) 162.248
CNS0095602Golden flower (diploid) 219.868
CNS0095603Golden flower (diploid) 322.451
CNS0095604Slightly white alabastrum(tetraploid) 129.491
CNS0095605Slightly white alabastrum(tetraploid) 225.749
CNS0095606Slightly white alabastrum(tetraploid) 316.285
CNS0095607Whole white alabastrum(tetraploid) 133.855
CNS0095608Whole white alabastrum(tetraploid) 229.984
CNS0095609Whole white alabastrum(tetraploid) 335.117
CNS0095610Silvery flower (tetraploid) 18.251
CNS0095611Silvery flower (tetraploid) 29.803
CNS0095612Silvery flower (tetraploid) 311.752
CNS0095613Golden flower (tetraploid) 15.465
CNS0095614Golden flower (tetraploid) 28.897
CNS0095615Golden flower (tetraploid) 37.233
CRA001975CRR073297Stem 139.844
CRR073298Stem 244.888
CRR073299Stem 338.123
CRR073300Leaf 139.261
CRR073301Leaf 247.498
CRR073302Leaf 332.370
CRR073303Juvenile bud 128.879
CRR073304Juvenile bud 217.758
CRR073305Juvenile bud 331.889
CRR073306Third green 110.199
CRR073307Third green 25.163
CRR073308Third green 38.354
CRR073309Second white 114.625
CRR073310Second white 210.614
CRR073311Second white 316.479
CRR073312Silver flowering 119.359
CRR073313Silver flowering 220.119
CRR073314Silver flowering 319.018
CRR073315Gold flowering 130.651
CRR073316Gold flowering 248.085
CRR073317Gold flowering 334.083
CRR073318Tawny withering 113.966
CRR073319Tawny withering 216.018
CRR073320Tawny withering 36.096