Gene detail

Detail information of GWHGAAZE030720

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277288.1	0	PREDICTED: WD repeat-containing protein 74 isoform X1 [Vitis vinifera]
COG	YP_007096797.1	0.000000004	WD40 repeat-containing protein
trEMBL	tr\|D7TTT7\|D7TTT7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33852.3}
TAIR10	AT1G29320.1	4E-134	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47655848	47659046	+
GWHAAZE00000009	mRNA	47655848	47659046	+
GWHAAZE00000009	exon	47655848	47655929	+
GWHAAZE00000009	exon	47656060	47656175	+
GWHAAZE00000009	exon	47656497	47656526	+
GWHAAZE00000009	exon	47656660	47656796	+
GWHAAZE00000009	exon	47657432	47657611	+
GWHAAZE00000009	exon	47657703	47657766	+
GWHAAZE00000009	exon	47657876	47657983	+
GWHAAZE00000009	exon	47658169	47658322	+
GWHAAZE00000009	exon	47658428	47658517	+
GWHAAZE00000009	exon	47658835	47658890	+
GWHAAZE00000009	exon	47659041	47659046	+
GWHAAZE00000009	CDS	47655848	47655929	+
GWHAAZE00000009	CDS	47656060	47656175	+
GWHAAZE00000009	CDS	47656497	47656526	+
GWHAAZE00000009	CDS	47656660	47656796	+
GWHAAZE00000009	CDS	47657432	47657611	+
GWHAAZE00000009	CDS	47657703	47657766	+
GWHAAZE00000009	CDS	47657876	47657983	+
GWHAAZE00000009	CDS	47658169	47658322	+
GWHAAZE00000009	CDS	47658428	47658517	+
GWHAAZE00000009	CDS	47658835	47658890	+
GWHAAZE00000009	CDS	47659041	47659046	+

Transcript Sequence
>GWHTAAZE030754 ATGCCGCGTACAAGTAAACTGGAGTCACCTGGTTGCCCTCCCATTCGAGCCCTAACTTTCGACGTTCTCGGTCTTGTTAAAGTTGTTGAAACTCGTGCTAAGCAAGGGGGATTTCCTGAAGTGGTTCAGAGATGGGGCGAACCGGACACCTCGCGAAGTGTCCTCGCTGCTTCCATTAATGACCGTGAATTTCACCCTCTGTTAGCTATTGCAAGGAAAAGCGGTCAGGTTGAGGTGCTTAGTCCTCTTAACGGCAATCTTCATGTTTCGGTTCCTAGTGTTTGTCAAGATGGCATTCGACCAGAAGATGATGCGGTTGTTGGGTTGCATCTGTTCAAACAACAGAAAGTGGAGGTGTCACCTAGGTCATGCACATTATTTACATGCACAACAAAAGGGTGGGCAAGTGTGAGGTCTGTTGAAGTGCCTAAATCATCAGGGGATACTGTCTGTAACGGTACTCCAACAACATGGAATGTATGTGCTGCGGGTAATATATTGTGTTCTAAAGTGGATGCAAAGGAAAACTATGCTTTATTTGGAGGGAAGGGAGTTGAAGTTAATGTTTGGGACCTTGAAAAATGTAGTAAAATCTGGACTGCCAAATCTCCTCCTAAAAACAGTCTTGGTATATTTACCCCTACTTGGTTTACTTCAGCAACATTCTTAAGTAAAGATGACCACCGTAAATTTGTCGCAGGCACCAATAGCCATCAGGTGCGTCTCTACGATATTTCTGCTCAAAGAAGACCTGTTATCTCATTTGATTTTCGGGAGACCCCCATTAAAGCAGTTACTGAAGATATGGATGGCCATACTATTTATATAGGAAATGGGTCTGGTGACCTTGCATCAGTTGACATACGCACAGGGAAACTTTTAGGCTGTTTTTTGGGAAAATGCTCTGGAAGTATAAGATCCATAGCCAGACACCCACAGCTCCCACTGATAGCCTCATGCGGACTGGATAGCTATTTACGCGTTTGGGATATAAAGTCCCGGCAGCTTCTTTCTGCGGTTTAG

Network for GWHGAAZE030720

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.604
	SRR3591706	second leaf	11.950
	SRR3591707	mature leaf	12.330
	SRR3591708	Shoot apex	24.596
	SRR3591709	Stem	18.326
	SRR3591710	White floral bud	17.993
	SRR3591711	White flower	23.471
	SRR3591712	Green floral bud	25.518
	SRR3591713	Yellow flower	19.187
SRP173429	SRR8316895	Juvenile bud stage	13.799
	SRR8316896	Juvenile bud stage	18.976
	SRR8316897	Juvenile bud stage	9.169
	SRR8316894	Third green stage	8.078
	SRR8316900	Third green stage	21.742
	SRR8316901	Third green stage	19.159
	SRR8316898	Complete white stage	4.801
	SRR8316899	Complete white stage	23.979
	SRR8316903	Complete white stage	9.377
	SRR8316902	Silver flowering stage	6.445
	SRR8316904	Silver flowering stage	9.577
	SRR8316905	Silver flowering stage	2.956
	SRR8316906	Gold flowering stage	12.321
	SRR8316907	Gold flowering stage	11.374
	SRR8316908	Gold flowering stage	17.047
SRP132670	SRR6706286	Control	25.022
	SRR6706287	Light intensity 50%	23.068
	SRR6706288	Light intensity 20%	23.834
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.377
	CNS0095593	Slightly white alabastrum(diploid) 2	12.107
	CNS0095594	Slightly white alabastrum(diploid) 3	10.592
	CNS0095595	Whole white alabastrum(diploid) 2	9.633
	CNS0095596	Whole white alabastrum(diploid) 3	9.213
	CNS0095597	Whole white alabastrum(diploid) 4	5.389
	CNS0095598	Silvery flower (diploied) 1	14.466
	CNS0095599	Silvery flower (diploied) 2	8.737
	CNS0095600	Silvery flower (diploied) 3	16.694
	CNS0095601	Golden flower (diploid) 1	8.065
	CNS0095602	Golden flower (diploid) 2	14.547
	CNS0095603	Golden flower (diploid) 3	13.275
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.171
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.181
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.224
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.397
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.104
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.301
	CNS0095610	Silvery flower (tetraploid) 1	19.561
	CNS0095611	Silvery flower (tetraploid) 2	19.769
	CNS0095612	Silvery flower (tetraploid) 3	15.714
	CNS0095613	Golden flower (tetraploid) 1	7.955
	CNS0095614	Golden flower (tetraploid) 2	19.966
	CNS0095615	Golden flower (tetraploid) 3	12.791
CRA001975	CRR073297	Stem 1	23.609
	CRR073298	Stem 2	20.537
	CRR073299	Stem 3	19.383
	CRR073300	Leaf 1	24.454
	CRR073301	Leaf 2	23.383
	CRR073302	Leaf 3	25.553
	CRR073303	Juvenile bud 1	22.689
	CRR073304	Juvenile bud 2	14.794
	CRR073305	Juvenile bud 3	23.758
	CRR073306	Third green 1	1.189
	CRR073307	Third green 2	2.285
	CRR073308	Third green 3	2.601
	CRR073309	Second white 1	5.342
	CRR073310	Second white 2	5.399
	CRR073311	Second white 3	5.462
	CRR073312	Silver flowering 1	5.638
	CRR073313	Silver flowering 2	4.601
	CRR073314	Silver flowering 3	4.866
	CRR073315	Gold flowering 1	9.234
	CRR073316	Gold flowering 2	21.845
	CRR073317	Gold flowering 3	14.082
	CRR073318	Tawny withering 1	17.981
	CRR073319	Tawny withering 2	11.940
	CRR073320	Tawny withering 3	23.419