Gene detail

Detail information of GWHGAAZE030725

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO52608.1	5.452E-115	hypothetical protein CISIN_1g013135mg [Citrus sinensis]
trEMBL	tr\|A0A067EC07\|A0A067EC07_CITSI	2E-115	Uncharacterized protein {ECO:0000313\|EMBL:KDO52608.1}
TAIR10	AT5G07900.1	3E-53	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47696884	47697747	+
GWHAAZE00000009	mRNA	47696884	47697747	+
GWHAAZE00000009	exon	47696884	47697747	+
GWHAAZE00000009	CDS	47696884	47697747	+

Transcript Sequence
>GWHTAAZE030759 ATGTACAATGCGCAGAAATGTTTTAAACCAAAGTTTGAGTTTTTCGAATCTTTGGGCTTTTCAAGGGAAGAGATTGCTCAAGTTTTGTCATCGGAGCCTTATATTCTGGAAAGGAGCCTTGAAAACCACATCATCCCTTCTGTTGAAGTTCTTAGGCGTTTTGTTGATACAGATGAGACTGTCTTGAAAACTATCAAGTCGTGTTATCGCATCCTTGAATTCAATTTGGAAGAGGTTCTTGCTCCCAATATGGCTATGTTGATGGAGCATGGTGTACCCAAATCAAAAGCTCTTAAATTAATTATGCTCCAACCGAAGTCTCTTCTTTTAAGGAATCACCGATTTGCCGAGGTTGTAAAGGAAGTTAAGGAATTAGGTTTCAATCCCACTCATCTGCTATTTGTTTTAGCCATACGTTCAATTGCAGTGATGAGCAAATCACTTTGGGAGAGGAAAATGGTAATATATCGTAGTTTTGGTTTGTCAGATGATGAGATTCTTGCAGCGTTCCGATTGCAGCCCATGTGTATGATGACTTCAGAAAAGAAGATCAAGAAGTTGCTGGATTTCTACATGAATGAGCTGAAGATGACACCTTCCACGATTTCCAAGAATCCGAATATCCTGCTACTTAGCTTGGAGAAGAGAATTATTCCGAGGTGTTCAGTTTTGCAACTTTTGACGTCCAAGGATCAAATAAAGAGGAAGATAAGCATAATTTATGCATTCAGAATGACCGAAAGGATGTTTTTACATAGGTTTGTGAGCAAGTATCAGCTTTTGATTCCTGAGGTTGTTGCGGCACATCAAGGCAAGATACTGTTTGAAGGGTTTCCCCAAATTCCCCTTGAATTTAATATGTGA

Network for GWHGAAZE030725

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	2	133	1.80E-13
PF02536.15	mTERF	100	250	1.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.823
	SRR3591706	second leaf	1.644
	SRR3591707	mature leaf	5.353
	SRR3591708	Shoot apex	5.024
	SRR3591709	Stem	4.125
	SRR3591710	White floral bud	4.828
	SRR3591711	White flower	9.362
	SRR3591712	Green floral bud	6.908
	SRR3591713	Yellow flower	6.036
SRP173429	SRR8316895	Juvenile bud stage	3.524
	SRR8316896	Juvenile bud stage	4.429
	SRR8316897	Juvenile bud stage	2.807
	SRR8316894	Third green stage	2.627
	SRR8316900	Third green stage	7.658
	SRR8316901	Third green stage	5.644
	SRR8316898	Complete white stage	1.603
	SRR8316899	Complete white stage	9.914
	SRR8316903	Complete white stage	4.130
	SRR8316902	Silver flowering stage	3.383
	SRR8316904	Silver flowering stage	5.511
	SRR8316905	Silver flowering stage	2.260
	SRR8316906	Gold flowering stage	5.561
	SRR8316907	Gold flowering stage	4.906
	SRR8316908	Gold flowering stage	8.160
SRP132670	SRR6706286	Control	0.858
	SRR6706287	Light intensity 50%	1.182
	SRR6706288	Light intensity 20%	0.758
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.573
	CNS0095593	Slightly white alabastrum(diploid) 2	5.005
	CNS0095594	Slightly white alabastrum(diploid) 3	6.900
	CNS0095595	Whole white alabastrum(diploid) 2	4.089
	CNS0095596	Whole white alabastrum(diploid) 3	4.185
	CNS0095597	Whole white alabastrum(diploid) 4	3.918
	CNS0095598	Silvery flower (diploied) 1	6.629
	CNS0095599	Silvery flower (diploied) 2	7.024
	CNS0095600	Silvery flower (diploied) 3	7.427
	CNS0095601	Golden flower (diploid) 1	4.609
	CNS0095602	Golden flower (diploid) 2	8.852
	CNS0095603	Golden flower (diploid) 3	7.083
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.661
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.614
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.076
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.888
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.483
	CNS0095610	Silvery flower (tetraploid) 1	6.359
	CNS0095611	Silvery flower (tetraploid) 2	7.212
	CNS0095612	Silvery flower (tetraploid) 3	4.048
	CNS0095613	Golden flower (tetraploid) 1	3.843
	CNS0095614	Golden flower (tetraploid) 2	5.115
	CNS0095615	Golden flower (tetraploid) 3	6.136
CRA001975	CRR073297	Stem 1	1.326
	CRR073298	Stem 2	0.988
	CRR073299	Stem 3	0.910
	CRR073300	Leaf 1	1.055
	CRR073301	Leaf 2	1.380
	CRR073302	Leaf 3	1.558
	CRR073303	Juvenile bud 1	1.891
	CRR073304	Juvenile bud 2	0.987
	CRR073305	Juvenile bud 3	0.454
	CRR073306	Third green 1	0.456
	CRR073307	Third green 2	0.047
	CRR073308	Third green 3	0.900
	CRR073309	Second white 1	1.140
	CRR073310	Second white 2	0.798
	CRR073311	Second white 3	1.201
	CRR073312	Silver flowering 1	0.571
	CRR073313	Silver flowering 2	0.497
	CRR073314	Silver flowering 3	1.948
	CRR073315	Gold flowering 1	2.138
	CRR073316	Gold flowering 2	1.553
	CRR073317	Gold flowering 3	1.230
	CRR073318	Tawny withering 1	2.130
	CRR073319	Tawny withering 2	2.285
	CRR073320	Tawny withering 3	1.878