Gene detail

Detail information of GWHGAAZE030726

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073018.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Sesamum indicum]
COG	YP_004775215.1	2E-21	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q8LFN2\|Y3037_ARATH	1E-158	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor)
trEMBL	tr\|F6GST2\|F6GST2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43317.1}
TAIR10	AT5G14210.1	2E-177	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47703405	47706233	+
GWHAAZE00000009	mRNA	47703405	47706233	+
GWHAAZE00000009	exon	47703405	47704683	+
GWHAAZE00000009	exon	47704793	47704926	+
GWHAAZE00000009	exon	47705013	47705256	+
GWHAAZE00000009	exon	47705369	47705580	+
GWHAAZE00000009	exon	47705662	47705687	+
GWHAAZE00000009	exon	47705786	47705897	+
GWHAAZE00000009	exon	47706033	47706233	+
GWHAAZE00000009	CDS	47703405	47704683	+
GWHAAZE00000009	CDS	47704793	47704926	+
GWHAAZE00000009	CDS	47705013	47705256	+
GWHAAZE00000009	CDS	47705369	47705580	+
GWHAAZE00000009	CDS	47705662	47705687	+
GWHAAZE00000009	CDS	47705786	47705897	+
GWHAAZE00000009	CDS	47706033	47706233	+

Transcript Sequence
>GWHTAAZE030760 ATGGGGTTGTCTACTCTGTTTCTGTTATTGTGTCTTTGGTTGAGTTTCTTTATTTTGGGTACCCACGAACTACAATCTTCACAAACCCAAGTGCTTCTTCAGCTAAGGAAGCAATTGGAGTATCCGAAGCAATTGGATATTTGGTTCAATAGTAGCACAGATTTGTGCTATTTGTCATCTCCACAAGTGAACATCAGTTGTCAAAACAATATTGTCTCTGAGCTCAGAATAGTGGGTGACAAGCCAAACAAGGTAAGCATAAGCAATTTCCATGGATCAGATCAAACTCTATCAGAAAATTTCTCTATGGATTCTTTTGTAACAACCTTGACTAGGCTAACCAGCTTGAGAGTCCTTAGTCTGGTTTCCTTGGGCATTTGGGGTCCAATTCCAGACAAAATCCACAGATTCTATTCGCTGGAATATCTAGACTTGAGTTGGAATTTTCTGTTTGGTTCAATTCCTCCTCCCATTTCAAGAATAGCGAACCTCCAAACACTTACTCTAGACGGAAATTTCTTCAATGGAACCTTCCCCGATTGGTTTGGTTCACTATCAAAGCTAACCAATTTAAGCTTGAGGAACAACCGGCTGACCGGTTCATTATTGCCTTCAATACGAAGTGTTACCACTCTGACTTACCTTGATTTATCGAACAATGAAATCTCGGGCATTTTGCCCTCTATGCCAAAAAGCTTGGTCATGATTTTCCTCGGTAACAACTCCTTCAATGGTGAGATTCCACAGCAATTTAGCCAATTGCATCAGCTTCAGAAACTTGACCTCTCATCCAATTCTCTAGGAGGAACTCCTCCCGCTACTCTGTTTTCTCTGCCCAGTATCACTTACTTAAATTTGGCATCAAACATGTTGAGTGGGTCACTTTCAGCCCATTTGAGGTGTGGCTTTGAGCTTGGGTTAGTCAATATATCTAATAATAGATTAAGCGGTTGGTTACCTTCCTGTTTGAGCGCCACAGTGAACAACAGAGTTGTTTCATATTGGGGGAATTGCTTGTCGTTTGATTTAAGCCATCAACACCCGGAAACATATTGCATTGAAGCCCAAACAAATAAGAAAGAAACTCGAACAAAGAATTTAGGACTCTTACTGGGAGTTATTGGAGGGCTTTTTCTCATTATGGTACTTCTGGTTTTTGGATCTATCATTCTATTTCGAAAATTCTATTCTCGAGAAACAGCAGAGCAACATTTACTGCACAAGTCTGAGCATAATAACTCTGTTGTTGGGTTCCCTTCAGAGCTCATAACAAATGCAAGGTTTATTTCCGAAGCTGCCAAGTTAGGGGCGCAAAGCACTCCAGTGCATCGATCATTTACGTTCGATGAGTTAAAGGAAGCCACTAACAGCTTTGATAAGTCTACCTTAATGGGTGAAGGCTCAAACGGCAAGCTATGCAAAGGAAGACTAGAGAATGGGACTCAAGTAGCTATAAGGCGCTTAATCGTGTCAAAGAAGTATACACTTCGAAATCTTAGACTTAGGTTGGATTTGCTTGCAAAGCTTCGACACCCTCATTTGGTATGCCTTCTGGGGCACTGCATTGACAGTGAAAGGAGAGACGAGTCTGGTGCAAACATAGTCTATCTTGTATATGAATATATGCCCAATGGGAACTATCGTGCTCATCTCTCTGAGGAGAGTATAGAAAAGGGTCTCAAATGGTCCGGCAGATTAGCGGTACTAATTGGTGTTGCCAAGGCCGTGCACTTTCTACACACCGGACTTATCCCTGGTTTTTTCAACAATAGATTGAAATCGACTAATGTCTTGATGAATGAGCACGGAATGGCAAAGCTAAAAGACTACGGTCTGTCCATTGTAGCAGAAGAAATTGATATACATAAGGCAAGAGATGAAGGCCTTGATTCATGGCAAATGAAGAGCTTAGAGGATGATGTTTACAGCTTCGGGTTCATATTGCTTGAGTCACTTGTTGGGCCTTCAAAGTCTGCAAGGAAGGATGCAGTTCTGCTAAATGAAATGGCATCTTTTGGGAGCCAGGATGGGAGGAGGCAAATCGTGGACCCAACAGTACTTGCTTCTTGCTCGCAAGAATCTTTATCAATTGTGATCTCTATAACCAACAAATGCATCTCTCCTGATCCATCAGCTCGTCCATCTTTTGAGGATATTCTTTGGAACTTACAGTACGCGGCTCAAGTTCAGGCAACCACAGAAGGGTGA

Network for GWHGAAZE030726

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	139	158	0.057
PF13855.7	LRR_8	163	222	3.30E-09
PF13855.7	LRR_8	232	291	1.30E-09
PF07714.18	PK_Tyr_Ser-Thr	462	721	7.00E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.463
	SRR3591706	second leaf	27.675
	SRR3591707	mature leaf	15.835
	SRR3591708	Shoot apex	21.630
	SRR3591709	Stem	12.506
	SRR3591710	White floral bud	3.420
	SRR3591711	White flower	2.624
	SRR3591712	Green floral bud	4.790
	SRR3591713	Yellow flower	0.281
SRP173429	SRR8316895	Juvenile bud stage	9.308
	SRR8316896	Juvenile bud stage	11.070
	SRR8316897	Juvenile bud stage	5.656
	SRR8316894	Third green stage	5.056
	SRR8316900	Third green stage	8.628
	SRR8316901	Third green stage	6.650
	SRR8316898	Complete white stage	0.413
	SRR8316899	Complete white stage	10.907
	SRR8316903	Complete white stage	1.610
	SRR8316902	Silver flowering stage	0.222
	SRR8316904	Silver flowering stage	0.448
	SRR8316905	Silver flowering stage	0.029
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.088
	SRR8316908	Gold flowering stage	0.428
SRP132670	SRR6706286	Control	5.732
	SRR6706287	Light intensity 50%	5.754
	SRR6706288	Light intensity 20%	7.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.318
	CNS0095593	Slightly white alabastrum(diploid) 2	5.377
	CNS0095594	Slightly white alabastrum(diploid) 3	6.166
	CNS0095595	Whole white alabastrum(diploid) 2	4.349
	CNS0095596	Whole white alabastrum(diploid) 3	2.475
	CNS0095597	Whole white alabastrum(diploid) 4	3.860
	CNS0095598	Silvery flower (diploied) 1	12.368
	CNS0095599	Silvery flower (diploied) 2	7.871
	CNS0095600	Silvery flower (diploied) 3	2.576
	CNS0095601	Golden flower (diploid) 1	10.155
	CNS0095602	Golden flower (diploid) 2	4.950
	CNS0095603	Golden flower (diploid) 3	4.976
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.648
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.605
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.849
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.112
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.201
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.332
	CNS0095610	Silvery flower (tetraploid) 1	0.260
	CNS0095611	Silvery flower (tetraploid) 2	1.996
	CNS0095612	Silvery flower (tetraploid) 3	1.007
	CNS0095613	Golden flower (tetraploid) 1	0.139
	CNS0095614	Golden flower (tetraploid) 2	0.089
	CNS0095615	Golden flower (tetraploid) 3	0.116
CRA001975	CRR073297	Stem 1	17.418
	CRR073298	Stem 2	13.255
	CRR073299	Stem 3	12.903
	CRR073300	Leaf 1	9.151
	CRR073301	Leaf 2	9.884
	CRR073302	Leaf 3	7.492
	CRR073303	Juvenile bud 1	5.997
	CRR073304	Juvenile bud 2	1.595
	CRR073305	Juvenile bud 3	7.711
	CRR073306	Third green 1	0.278
	CRR073307	Third green 2	0.516
	CRR073308	Third green 3	0.474
	CRR073309	Second white 1	0.011
	CRR073310	Second white 2	0.060
	CRR073311	Second white 3	0.041
	CRR073312	Silver flowering 1	0.043
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	11.939
	CRR073316	Gold flowering 2	17.963
	CRR073317	Gold flowering 3	10.551
	CRR073318	Tawny withering 1	7.922
	CRR073319	Tawny withering 2	7.233
	CRR073320	Tawny withering 3	8.573