Detail information of GWHGAAZE030729


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO52619.10hypothetical protein CISIN_1g011097mg [Citrus sinensis]
COGYP_004173878.16E-176argininosuccinate synthase
Swissprottr|Q9SZX3|ASSY_ARATH0Argininosuccinate synthase, chloroplastic (Precursor)
trEMBLtr|A0A067EBQ2|A0A067EBQ2_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO52619.1}
TAIR10AT4G24830.10arginosuccinate synthase family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4771601147720814-
GWHAAZE00000009mRNA4771601147720814-
GWHAAZE00000009exon4771601147716563-
GWHAAZE00000009exon4771667747716765-
GWHAAZE00000009exon4771733547717520-
GWHAAZE00000009exon4771849047718672-
GWHAAZE00000009exon4771881047718858-
GWHAAZE00000009exon4771934547719483-
GWHAAZE00000009exon4771995047720019-
GWHAAZE00000009exon4772045747720515-
GWHAAZE00000009exon4772074847720814-
GWHAAZE00000009CDS4772074847720814-
GWHAAZE00000009CDS4772045747720515-
GWHAAZE00000009CDS4771995047720019-
GWHAAZE00000009CDS4771934547719483-
GWHAAZE00000009CDS4771881047718858-
GWHAAZE00000009CDS4771849047718672-
GWHAAZE00000009CDS4771733547717520-
GWHAAZE00000009CDS4771667747716765-
GWHAAZE00000009CDS4771601147716563-
Transcript Sequence

Network for GWHGAAZE030729

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00764.20Arginosuc_synth951891.30E-34
PF00764.20Arginosuc_synth1904566.60E-99
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01940argG, ASS1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220

Gene Ontology

GO term OntologyName
GO:0006526biological_processarginine biosynthetic process
GO:0004055molecular_functionargininosuccinate synthase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf81.865
SRR3591706second leaf32.371
SRR3591707mature leaf29.643
SRR3591708Shoot apex83.715
SRR3591709Stem47.331
SRR3591710White floral bud46.838
SRR3591711White flower49.125
SRR3591712Green floral bud71.757
SRR3591713Yellow flower25.373
SRP173429 SRR8316895Juvenile bud stage 51.266
SRR8316896Juvenile bud stage 77.412
SRR8316897Juvenile bud stage 31.390
SRR8316894Third green stage 27.953
SRR8316900Third green stage 96.133
SRR8316901Third green stage 80.197
SRR8316898Complete white stage 23.215
SRR8316899Complete white stage 79.392
SRR8316903Complete white stage 39.657
SRR8316902Silver flowering stage21.471
SRR8316904Silver flowering stage25.746
SRR8316905Silver flowering stage13.205
SRR8316906Gold flowering stage 38.727
SRR8316907Gold flowering stage 34.771
SRR8316908Gold flowering stage 42.011
SRP132670SRR6706286Control83.353
SRR6706287Light intensity 50%84.495
SRR6706288Light intensity 20%89.135
CNP0000432CNS0095592Slightly white alabastrum(diploid) 163.248
CNS0095593Slightly white alabastrum(diploid) 270.138
CNS0095594Slightly white alabastrum(diploid) 363.457
CNS0095595Whole white alabastrum(diploid) 263.490
CNS0095596Whole white alabastrum(diploid) 370.336
CNS0095597Whole white alabastrum(diploid) 450.519
CNS0095598Silvery flower (diploied) 162.341
CNS0095599Silvery flower (diploied) 261.984
CNS0095600Silvery flower (diploied) 353.160
CNS0095601Golden flower (diploid) 152.672
CNS0095602Golden flower (diploid) 248.727
CNS0095603Golden flower (diploid) 347.175
CNS0095604Slightly white alabastrum(tetraploid) 164.565
CNS0095605Slightly white alabastrum(tetraploid) 255.355
CNS0095606Slightly white alabastrum(tetraploid) 390.715
CNS0095607Whole white alabastrum(tetraploid) 137.398
CNS0095608Whole white alabastrum(tetraploid) 227.252
CNS0095609Whole white alabastrum(tetraploid) 383.289
CNS0095610Silvery flower (tetraploid) 142.111
CNS0095611Silvery flower (tetraploid) 245.635
CNS0095612Silvery flower (tetraploid) 341.295
CNS0095613Golden flower (tetraploid) 112.204
CNS0095614Golden flower (tetraploid) 227.268
CNS0095615Golden flower (tetraploid) 39.357
CRA001975CRR073297Stem 1104.461
CRR073298Stem 2102.935
CRR073299Stem 3118.542
CRR073300Leaf 1114.699
CRR073301Leaf 2111.560
CRR073302Leaf 3128.597
CRR073303Juvenile bud 1113.722
CRR073304Juvenile bud 286.883
CRR073305Juvenile bud 3110.468
CRR073306Third green 142.016
CRR073307Third green 240.461
CRR073308Third green 347.835
CRR073309Second white 137.479
CRR073310Second white 230.108
CRR073311Second white 319.452
CRR073312Silver flowering 126.077
CRR073313Silver flowering 230.824
CRR073314Silver flowering 322.702
CRR073315Gold flowering 167.186
CRR073316Gold flowering 295.621
CRR073317Gold flowering 373.216
CRR073318Tawny withering 189.958
CRR073319Tawny withering 268.934
CRR073320Tawny withering 384.637