Detail information of GWHGAAZE030730


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011024048.13.53371E-87PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Populus euphratica]
COGYP_007099301.10.000003WD40 repeat-containing protein
Swissprottr|Q8W117|SMU1_ARATH0.000002Suppressor of mec-8 and unc-52 protein homolog 1
trEMBLtr|A5C3S0|A5C3S0_VITVI2E-78Putative uncharacterized protein {ECO:0000313|EMBL:CAN81788.1}
TAIR10AT3G49180.13E-12Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4772627747730092-
GWHAAZE00000009mRNA4772627747730092-
GWHAAZE00000009exon4772627747726605-
GWHAAZE00000009exon4772686647727153-
GWHAAZE00000009exon4772723147727309-
GWHAAZE00000009exon4772741647727618-
GWHAAZE00000009exon4772784947727993-
GWHAAZE00000009exon4772822347728356-
GWHAAZE00000009exon4772860247728715-
GWHAAZE00000009exon4772988747730092-
GWHAAZE00000009five_prime_UTR4772988747730092-
GWHAAZE00000009five_prime_UTR4772860247728715-
GWHAAZE00000009five_prime_UTR4772824947728356-
GWHAAZE00000009CDS4772822347728248-
GWHAAZE00000009CDS4772784947727993-
GWHAAZE00000009CDS4772741647727618-
GWHAAZE00000009CDS4772723147727309-
GWHAAZE00000009CDS4772686647727153-
GWHAAZE00000009CDS4772640547726605-
GWHAAZE00000009three_prime_UTR4772627747726404-
Transcript Sequence

Network for GWHGAAZE030730

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4027600.0075
PF00400.33WD401161510.0027
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.649
SRR3591706second leaf0.482
SRR3591707mature leaf0.593
SRR3591708Shoot apex2.201
SRR3591709Stem1.488
SRR3591710White floral bud4.936
SRR3591711White flower2.396
SRR3591712Green floral bud2.339
SRR3591713Yellow flower0.649
SRP173429 SRR8316895Juvenile bud stage 1.477
SRR8316896Juvenile bud stage 1.652
SRR8316897Juvenile bud stage 0.602
SRR8316894Third green stage 0.441
SRR8316900Third green stage 0.411
SRR8316901Third green stage 0.661
SRR8316898Complete white stage 0.029
SRR8316899Complete white stage 1.123
SRR8316903Complete white stage 0.437
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.166
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.053
SRR8316907Gold flowering stage 0.004
SRR8316908Gold flowering stage 0.063
SRP132670SRR6706286Control0.761
SRR6706287Light intensity 50%0.717
SRR6706288Light intensity 20%0.701
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.713
CNS0095593Slightly white alabastrum(diploid) 21.832
CNS0095594Slightly white alabastrum(diploid) 31.239
CNS0095595Whole white alabastrum(diploid) 20.855
CNS0095596Whole white alabastrum(diploid) 30.770
CNS0095597Whole white alabastrum(diploid) 40.419
CNS0095598Silvery flower (diploied) 11.916
CNS0095599Silvery flower (diploied) 21.205
CNS0095600Silvery flower (diploied) 30.632
CNS0095601Golden flower (diploid) 11.117
CNS0095602Golden flower (diploid) 20.729
CNS0095603Golden flower (diploid) 31.119
CNS0095604Slightly white alabastrum(tetraploid) 11.455
CNS0095605Slightly white alabastrum(tetraploid) 21.198
CNS0095606Slightly white alabastrum(tetraploid) 32.082
CNS0095607Whole white alabastrum(tetraploid) 10.475
CNS0095608Whole white alabastrum(tetraploid) 20.275
CNS0095609Whole white alabastrum(tetraploid) 31.329
CNS0095610Silvery flower (tetraploid) 10.546
CNS0095611Silvery flower (tetraploid) 21.004
CNS0095612Silvery flower (tetraploid) 30.080
CNS0095613Golden flower (tetraploid) 10.059
CNS0095614Golden flower (tetraploid) 20.204
CNS0095615Golden flower (tetraploid) 30.116
CRA001975CRR073297Stem 12.124
CRR073298Stem 21.404
CRR073299Stem 30.698
CRR073300Leaf 10.976
CRR073301Leaf 20.820
CRR073302Leaf 31.353
CRR073303Juvenile bud 10.242
CRR073304Juvenile bud 20.312
CRR073305Juvenile bud 30.536
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.004
CRR073310Second white 20.000
CRR073311Second white 30.030
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.073
CRR073316Gold flowering 20.446
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.229
CRR073319Tawny withering 20.479
CRR073320Tawny withering 30.101