Gene detail

Detail information of GWHGAAZE030734

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007199680.1	0	hypothetical protein PRUPE_ppa000257mg [Prunus persica]
COG	YP_001434592.1	1E-137	translation initiation factor IF-2
Swissprot	tr\|Q9XEK9\|IF2C_EUGGR	4E-33	Translation initiation factor IF-2, chloroplastic (Fragment)
trEMBL	tr\|M5VIC8\|M5VIC8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00879.1}
TAIR10	AT1G76810.1	0	eukaryotic translation initiation factor 2 (eIF-2) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47791794	47800456	+
GWHAAZE00000009	mRNA	47791794	47800456	+
GWHAAZE00000009	exon	47791794	47794406	+
GWHAAZE00000009	exon	47794495	47794602	+
GWHAAZE00000009	exon	47794685	47794785	+
GWHAAZE00000009	exon	47794898	47794988	+
GWHAAZE00000009	exon	47795074	47795169	+
GWHAAZE00000009	exon	47795261	47795326	+
GWHAAZE00000009	exon	47797536	47797595	+
GWHAAZE00000009	exon	47798212	47798769	+
GWHAAZE00000009	exon	47799068	47799187	+
GWHAAZE00000009	exon	47799702	47799821	+
GWHAAZE00000009	exon	47799922	47800456	+
GWHAAZE00000009	CDS	47791794	47794406	+
GWHAAZE00000009	CDS	47794495	47794602	+
GWHAAZE00000009	CDS	47794685	47794785	+
GWHAAZE00000009	CDS	47794898	47794988	+
GWHAAZE00000009	CDS	47795074	47795169	+
GWHAAZE00000009	CDS	47795261	47795326	+
GWHAAZE00000009	CDS	47797536	47797595	+
GWHAAZE00000009	CDS	47798212	47798769	+
GWHAAZE00000009	CDS	47799068	47799187	+
GWHAAZE00000009	CDS	47799702	47799821	+
GWHAAZE00000009	CDS	47799922	47799987	+
GWHAAZE00000009	three_prime_UTR	47799988	47800456	+

Transcript Sequence
>GWHTAAZE030768 ATGGGTCGAAAGAAGCTGACCGCTCGTCAAGACGAGAACTCTACTGCCACCGCTCCCTCACAGGGCGGCGCGGGCAAGTCTAGAAAGAAGGCTGTTGTCATAGACGATGATGAATACTCCGTTGGCACGGAGTTATCTGAGGAACAACTGATTCCAGAAGAGCAAGTTGCACCAGTTGCCGCTAAAAAGAAGGGTAAGAAGGGTAATTCAAAGAGTTTGTTACCTAAAGATGAGGATGAAGAAGAGAAGAACGTTGAGGAAGAGAATGATGACGTTTCCACTATACAATTTGCTGGGAAGAAGAAATCAAAGTCAAAAAAGAGCGGCAACAATGGCTTGTTTAGTGCTTCAAGTTTTGGGCTACTTGAGGATGAGGGCAAGGATGATGACGATGATGAAATTTCTAGTCTAACACTTGACAAGGATGAGGTTGGTGGTGTTACAAGTGAGGAAGAGGGTGAGACTGTTGTAGCTACCTTTACAGGTAAGAAGAAGTCATCCAAGTCGAAAAAGGGTAATAGTTTGTTTTCCCGGTCAGCATTTGGTGCAATTGGGGATGATGATGACGGGGATGTTATTGATGATTCGGTATTGGAGAACCAATCTGATAATGACGATGAACCAGTTATTGCTTTTTCCGGGAAAAAGAAGTCATCCAAGTCTTCAAAGAAGCATACTAATGCATTTAGTGCTGCATTTGCTGGTGAAGACAATGGAGAAGATGCTTCTGTTTCTAAGTCAAGTGACGGTATGGTCAATGCTGATAGTGGTTCTCTGGATGAAGATGCATCTGTAATTACGTTTTCCGGCAAAAAGAAGTCTTCCAAAAAGAAGAATAATAGTGACCTTGGTGCTCTTGAAATTGTGCCAAGAGATGGTACAATAGATGTGGTTCAGCCTGAACAACCTACTGTGAACACAAGCAGCATAGAAGCCGATGATGCCAAAAGTAAAAAACAGGTGAACCAAGAAGTGGTAGGAACTTCCAAAAACAAGAAGAAGAAAAAGAAGGGTGAACGAACTGCTCAAGAAGAGGACGATCTTGACAAGATTCTGGCGGAGCTTGGTGAAACATCCAGTATATCAAAACCTGCTCCCGCTCCCACTCCCGCTCCTGCACCCGCGCCTGCTCCTCAAGAGGACGAAGTTACGACCCAGCCTGACCCAGCTGGGTTGGTAGATGCTACAGGTGAAAAGGAAGCTGATGAAGGAGGCGTGGAGACTGCAGCTGCAAAGAAGAGAAGAAAGAAAAAGGAAAAGGAAAAAGAGAAGAAGGCAGCAGCAGCAGCCCCTGCTATGGAAGAAAAACAGGAAGAAACAAGGGGTAAAGTAGCAGATAAGAAAGTTTCAAAAAAAATTAGGGAGATGCAAGAGGCAATCGCGAAAAAGAATGAAGCAGAGGAAAGAAAGAAAAGAGAAGAAGAGGAGAAGTTAAGGAAGGAAGAAGAGGAGCGGCGTCGGCAAGAAGAACTTGAAAAGCTAGCCGAAGAGAAGAAGAGACTAAAAAAGGAAAGGGAAAAGGAAAAGAAATTGAAGAAGCAACTAGAAGGGAAGCCTCTAACAGCAAAACAAAAAGAAGATGCACGTCGTCGGGAAGCAATGAGGAACCAAATACTTGCTAATGCAGGAGGTTTGCCTCTCCCTACTGCAGAAACTGGTGGTGCACCCACGAAAAGGCCCAAGTATCAAACGAAGAAATCAAGGGCTCCTCCTCAACCAAATGGTTCAGCCCCTGTAAAAGCTGTTGAAAGTACAGAATCAAAGGAAAACCTGGATGACAATGTGACCGGCGAGGACATTCTAGAAGAAGTGAAGGTCGAAGAGGTAGAATCAGTTAATGTGGAGGAGAAAAAAGAAGTTGCTGATGTGGCTGAAGAGGCTAGAACTGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAGGAAGATGAAGAATGGGATGCGAAGAGTTGGGATGACGAGGATCTCAAACTGCCTGGTAAAAGTGCATTTGCTGATGAAGAGGCTGACTCTGAGCCTGAACCTGCGGTTAAAAAAGAGTCAAAGAGTGCACGACCAACTCGTAATGATGTCATTGTTGCAATTCCTACTCAAAAAGTCAATCATGTACCACTCAAGTCCCAGGACATGGATAGTAAGAAAAGCAACGCGGGTGAGCATGCTGGGAAAAATAAGTTGAAAGATGTTACAGGGAAAAAAGAAGCACCTAAAGCAGCAGATGGAAGTAATCTCCGTTCCCCTATTTGTTGTATTATGGGTCACGTTGATACCGGTAAGACCAAACTGCTTGATTGTATCCGAGGCACTAATGTTCAGGAAGGTGAGGCTGGAGGGATTACCCAGCAAATTGGTGCAACATATTTTCCAGCTGAGAATATTCGTGATAGGACTAAGGAACTTAAAGCTGATGCAAAGCTGAATGTCCCGGGTCTATTGGTTATTGATACCCCTGGACATGAATCGTTTACAAATTTGCGGTCCCGTGGTTCAGGTTTATGTGATATTGCAATTTTGGTGGTTGACATAATGCATGGGTTGGAGCCACAGACCATTGAATCACTCAATCTTTTGAGAATGAGGAATACAGAGTTCATTGTGGCGTTGAATAAGGTGGATAGGTTGTATGGCTGGAAAACATGCCGCAATGCACCAATTGTGAAGGCCATGAAACAGCAATCCAAAGATGTCCAATTTGAATTTAATACGAGGCTCTCTCAGATTATCACACAATTCATGGAGCAAGGATTAAATACTGAGTTGTACTACAAGAACAAAGAAATGGGAGAAACTTTCAGTATTGTACCCACTAGTGCAATTAGTGGTGAAGGCATTCCTGATTTGTTGTTATTACTAGTTCAGTGGACTCAGAAGACAATGATTGAGAAACTTACATACAGCAATGAAATACAGTGTACGGTTTTGGAGGTTAAGGTTGTTGAAGGCCATGGGACCACCATTGATGTGGTCTTAGTTAATGGTACCCTTCATGAAGGGGATCAAATTGTTGGACCTATCGTTACCTCAGTACGAGCATTATTGACACCTCATCCAATGAAGGAACTCCGTGTGAAGGGAACTTATTTGCACCATAAAGAAATTAAGGCTGCACAGGGTATCAAGATTACTGCACAGGGCCTTGAGCATGCAATTGCAGGAACCGGTCTGTATGTGGTGAAAGCTGATGATGATTTGGAAGACATCAAGGAATCAGCTATGGAAGATATGAGGTCAGTAATGAATCGTATCGATAAAACTGGAGAAGGGGTTTGTGTTCAAGCGTCCACTCTTGGATCATTGGAAGCATTACTTGAGTTCTTGAAGACCCCTGCGGTAAACATACCTGTTAGTGGTATAAGCATAGGCCCTGTACACAAGAAAGATGTGATGAAGGCTAGTGTCATGCTTGAGAAGAAGAAAGAGTATGCCACGATCTTGGCTTTTGATGTTAAAGTGACACCAGAGGCTCGGGAACTTGCAGACGAAGTTGGTGTTAAAATATTCATCGCTGATATCATTTATCACTTGTTTGATCAGTTTAAGGCTTATATTGATAATCTCAAGGAGGAAAAGAAGAAGGAAGCTGCAGAGGATGCAGTGTTCCCTTGTGTTCTTAGGATTATACCTGACTGCGTTTTTAACAAGAAGGATCCAATTGTTTTGGGCGTTGATATTCTTGAAGGCATTGCAAAGGTTGGAACTCCAATATGTATTCCGCAAAAAGATTTTATAGATATCGGTCGAATCGCATCCATTGAAAATAACCACAAGCCAGTTGATTATGCCAAGAAAGGCCAGAAAGTAGCCATTAAGATAATTGGGACCAATTCAGAGGAACAGCAAAAGATGTTTGGGAGGCATTTCGAGGAAGAAGATGAGCTTGTAAGCCACATATCTAGGAGGTCAATTGATGTACTCAAGGCTAATTATAGGGATGATCTTTCTAATGATGAATGGAGGCTGGTTGTTAAACTGAAGAATCTGTTCAAGATACAATGAGTTTTCCTTTTCCATCCAGATTGATGTATTCTTGCTGCCGCCTGCCTGCCTGCTTATTTTCTTGGATAGATTTCAGTTTTCCTTATCAAAGAAAGAGCGTCATATGTTTCTGGGGCTGGAATGAGCCTCCTTACTGTATACCAAATTTGAGAAGAAACTGTGAAAGAATGATGAAATTGCGATGGGGGCGTGGAGAAATATTACTGGGGCGAGCACACCAAGTTACCAACTTCTGCCGCTTGACTGGGAATGGCCTATGGATGTGATGGATCCTTCTATTTTTGGCCCTGTTTTAGATTGTTTTAACTTGCACCTTTTACTTTTCTGAGGGTATGATAGCGTTGGGAATTACAGAAGATATGAGTGCAAACTTGTGCAGATCTGTTAGATGACTACGATCGCTTAGCTTTTCTGGCATTTTTATACCCCCTCCCTTTTTTTCTTTTTTCTCTTGAAAAGTTTTAATATA

Network for GWHGAAZE030734

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	749	957	2.20E-33
PF11987.9	IF-2	1078	1181	1.60E-22

Protein Sequence

>GWHPAAZE030752
MGRKKLTARQDENSTATAPSQGGAGKSRKKAVVIDDDEYSVGTELSEEQLIPEEQVAPVAAKKKGKKGNSKSLLPKDEDEEEKNVEEENDDVSTIQFAGKKKSKSKKSGNNGLFSASSFGLLEDEGKDDDDDEISSLTLDKDEVGGVTSEEEGETVVATFTGKKKSSKSKKGNSLFSRSAFGAIGDDDDGDVIDDSVLENQSDNDDEPVIAFSGKKKSSKSSKKHTNAFSAAFAGEDNGEDASVSKSSDGMVNADSGSLDEDASVITFSGKKKSSKKKNNSDLGALEIVPRDGTIDVVQPEQPTVNTSSIEADDAKSKKQVNQEVVGTSKNKKKKKKGERTAQEEDDLDKILAELGETSSISKPAPAPTPAPAPAPAPQEDEVTTQPDPAGLVDATGEKEADEGGVETAAAKKRRKKKEKEKEKKAAAAAPAMEEKQEETRGKVADKKVSKKIREMQEAIAKKNEAEERKKREEEEKLRKEEEERRRQEELEKLAEEKKRLKKEREKEKKLKKQLEGKPLTAKQKEDARRREAMRNQILANAGGLPLPTAETGGAPTKRPKYQTKKSRAPPQPNGSAPVKAVESTESKENLDDNVTGEDILEEVKVEEVESVNVEEKKEVADVAEEARTEEEEEEEEEEEEEEDEEWDAKSWDDEDLKLPGKSAFADEEADSEPEPAVKKESKSARPTRNDVIVAIPTQKVNHVPLKSQDMDSKKSNAGEHAGKNKLKDVTGKKEAPKAADGSNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADAKLNVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTCRNAPIVKAMKQQSKDVQFEFNTRLSQIITQFMEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMIEKLTYSNEIQCTVLEVKVVEGHGTTIDVVLVNGTLHEGDQIVGPIVTSVRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITAQGLEHAIAGTGLYVVKADDDLEDIKESAMEDMRSVMNRIDKTGEGVCVQASTLGSLEALLEFLKTPAVNIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADEVGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEDAVFPCVLRIIPDCVFNKKDPIVLGVDILEGIAKVGTPICIPQKDFIDIGRIASIENNHKPVDYAKKGQKVAIKIIGTNSEEQQKMFGRHFEEEDELVSHISRRSIDVLKANYRDDLSNDEWRLVVKLKNLFKIQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03243	EIF5B	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	64.668
	SRR3591706	second leaf	29.940
	SRR3591707	mature leaf	36.933
	SRR3591708	Shoot apex	40.066
	SRR3591709	Stem	51.495
	SRR3591710	White floral bud	62.219
	SRR3591711	White flower	74.748
	SRR3591712	Green floral bud	61.093
	SRR3591713	Yellow flower	60.669
SRP173429	SRR8316895	Juvenile bud stage	31.045
	SRR8316896	Juvenile bud stage	46.296
	SRR8316897	Juvenile bud stage	22.897
	SRR8316894	Third green stage	22.952
	SRR8316900	Third green stage	62.939
	SRR8316901	Third green stage	58.772
	SRR8316898	Complete white stage	15.511
	SRR8316899	Complete white stage	46.699
	SRR8316903	Complete white stage	45.789
	SRR8316902	Silver flowering stage	27.178
	SRR8316904	Silver flowering stage	43.776
	SRR8316905	Silver flowering stage	21.273
	SRR8316906	Gold flowering stage	53.424
	SRR8316907	Gold flowering stage	57.431
	SRR8316908	Gold flowering stage	58.456
SRP132670	SRR6706286	Control	49.868
	SRR6706287	Light intensity 50%	48.930
	SRR6706288	Light intensity 20%	46.976
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.538
	CNS0095593	Slightly white alabastrum(diploid) 2	89.669
	CNS0095594	Slightly white alabastrum(diploid) 3	104.743
	CNS0095595	Whole white alabastrum(diploid) 2	78.035
	CNS0095596	Whole white alabastrum(diploid) 3	78.797
	CNS0095597	Whole white alabastrum(diploid) 4	86.009
	CNS0095598	Silvery flower (diploied) 1	71.386
	CNS0095599	Silvery flower (diploied) 2	68.481
	CNS0095600	Silvery flower (diploied) 3	77.585
	CNS0095601	Golden flower (diploid) 1	59.115
	CNS0095602	Golden flower (diploid) 2	68.159
	CNS0095603	Golden flower (diploid) 3	66.528
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.158
	CNS0095605	Slightly white alabastrum(tetraploid) 2	70.415
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.756
	CNS0095607	Whole white alabastrum(tetraploid) 1	74.427
	CNS0095608	Whole white alabastrum(tetraploid) 2	82.501
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.638
	CNS0095610	Silvery flower (tetraploid) 1	90.680
	CNS0095611	Silvery flower (tetraploid) 2	72.346
	CNS0095612	Silvery flower (tetraploid) 3	70.089
	CNS0095613	Golden flower (tetraploid) 1	67.067
	CNS0095614	Golden flower (tetraploid) 2	80.415
	CNS0095615	Golden flower (tetraploid) 3	70.976
CRA001975	CRR073297	Stem 1	77.324
	CRR073298	Stem 2	76.477
	CRR073299	Stem 3	51.078
	CRR073300	Leaf 1	81.081
	CRR073301	Leaf 2	86.829
	CRR073302	Leaf 3	41.349
	CRR073303	Juvenile bud 1	75.840
	CRR073304	Juvenile bud 2	44.242
	CRR073305	Juvenile bud 3	81.706
	CRR073306	Third green 1	36.265
	CRR073307	Third green 2	30.989
	CRR073308	Third green 3	38.652
	CRR073309	Second white 1	21.415
	CRR073310	Second white 2	27.893
	CRR073311	Second white 3	24.182
	CRR073312	Silver flowering 1	25.720
	CRR073313	Silver flowering 2	27.563
	CRR073314	Silver flowering 3	29.025
	CRR073315	Gold flowering 1	35.101
	CRR073316	Gold flowering 2	50.060
	CRR073317	Gold flowering 3	11.217
	CRR073318	Tawny withering 1	64.424
	CRR073319	Tawny withering 2	86.214
	CRR073320	Tawny withering 3	62.878