Detail information of GWHGAAZE030738


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283698.13.4281E-102PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Vitis vinifera]
COGYP_003423599.14E-2450S ribosomal protein L22
Swissprottr|Q93VI3|RL171_ARATH6E-9560S ribosomal protein L17-1
trEMBLtr|D7SGX3|D7SGX3_VITVI3E-102Putative uncharacterized protein {ECO:0000313|EMBL:CBI15653.3}
TAIR10AT1G27400.15E-75Ribosomal protein L22p/L17e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4783365747834507-
GWHAAZE00000009mRNA4783365747834507-
GWHAAZE00000009exon4783365747833725-
GWHAAZE00000009exon4783388847833955-
GWHAAZE00000009exon4783407847834180-
GWHAAZE00000009exon4783427747834507-
GWHAAZE00000009CDS4783427747834507-
GWHAAZE00000009CDS4783407847834180-
GWHAAZE00000009CDS4783388847833955-
GWHAAZE00000009CDS4783365747833725-
Transcript Sequence

Network for GWHGAAZE030738

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00237.20Ribosomal_L2211251.30E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02880RP-L17e, RPL17 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf814.699
SRR3591706second leaf331.071
SRR3591707mature leaf133.313
SRR3591708Shoot apex1031.637
SRR3591709Stem347.778
SRR3591710White floral bud354.466
SRR3591711White flower398.064
SRR3591712Green floral bud610.565
SRR3591713Yellow flower328.523
SRP173429 SRR8316895Juvenile bud stage 274.857
SRR8316896Juvenile bud stage 355.462
SRR8316897Juvenile bud stage 209.900
SRR8316894Third green stage 173.859
SRR8316900Third green stage 588.920
SRR8316901Third green stage 517.023
SRR8316898Complete white stage 106.603
SRR8316899Complete white stage 429.810
SRR8316903Complete white stage 161.721
SRR8316902Silver flowering stage91.219
SRR8316904Silver flowering stage98.596
SRR8316905Silver flowering stage51.354
SRR8316906Gold flowering stage 149.779
SRR8316907Gold flowering stage 159.253
SRR8316908Gold flowering stage 223.750
SRP132670SRR6706286Control612.287
SRR6706287Light intensity 50%614.582
SRR6706288Light intensity 20%642.406
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1468.092
CNS0095593Slightly white alabastrum(diploid) 2524.608
CNS0095594Slightly white alabastrum(diploid) 3429.035
CNS0095595Whole white alabastrum(diploid) 2379.289
CNS0095596Whole white alabastrum(diploid) 3451.424
CNS0095597Whole white alabastrum(diploid) 4309.905
CNS0095598Silvery flower (diploied) 1219.699
CNS0095599Silvery flower (diploied) 2233.251
CNS0095600Silvery flower (diploied) 3182.753
CNS0095601Golden flower (diploid) 1169.298
CNS0095602Golden flower (diploid) 2160.913
CNS0095603Golden flower (diploid) 3154.257
CNS0095604Slightly white alabastrum(tetraploid) 1451.680
CNS0095605Slightly white alabastrum(tetraploid) 2423.040
CNS0095606Slightly white alabastrum(tetraploid) 3581.374
CNS0095607Whole white alabastrum(tetraploid) 1213.372
CNS0095608Whole white alabastrum(tetraploid) 2198.875
CNS0095609Whole white alabastrum(tetraploid) 3418.176
CNS0095610Silvery flower (tetraploid) 1173.629
CNS0095611Silvery flower (tetraploid) 2160.518
CNS0095612Silvery flower (tetraploid) 3121.895
CNS0095613Golden flower (tetraploid) 1106.290
CNS0095614Golden flower (tetraploid) 2133.708
CNS0095615Golden flower (tetraploid) 380.789
CRA001975CRR073297Stem 1770.976
CRR073298Stem 2739.123
CRR073299Stem 3897.544
CRR073300Leaf 1749.226
CRR073301Leaf 2814.905
CRR073302Leaf 31069.956
CRR073303Juvenile bud 1829.417
CRR073304Juvenile bud 2694.349
CRR073305Juvenile bud 3702.445
CRR073306Third green 1159.934
CRR073307Third green 2167.427
CRR073308Third green 3176.548
CRR073309Second white 1178.539
CRR073310Second white 2134.771
CRR073311Second white 376.687
CRR073312Silver flowering 1121.633
CRR073313Silver flowering 2200.463
CRR073314Silver flowering 3141.180
CRR073315Gold flowering 1395.142
CRR073316Gold flowering 2409.391
CRR073317Gold flowering 3362.020
CRR073318Tawny withering 1761.267
CRR073319Tawny withering 2661.421
CRR073320Tawny withering 3772.620