Gene detail

Detail information of GWHGAAZE030743

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283742.1	0	PREDICTED: snurportin-1 [Vitis vinifera]
trEMBL	tr\|D7SGY3\|D7SGY3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15663.3}
TAIR10	AT4G24880.1	5E-127	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47864270	47869226	+
GWHAAZE00000009	mRNA	47864270	47869226	+
GWHAAZE00000009	exon	47864270	47864646	+
GWHAAZE00000009	exon	47865312	47865498	+
GWHAAZE00000009	exon	47865578	47865828	+
GWHAAZE00000009	exon	47867287	47867320	+
GWHAAZE00000009	exon	47867438	47867503	+
GWHAAZE00000009	exon	47868146	47868238	+
GWHAAZE00000009	exon	47869038	47869226	+
GWHAAZE00000009	CDS	47864270	47864646	+
GWHAAZE00000009	CDS	47865312	47865498	+
GWHAAZE00000009	CDS	47865578	47865828	+
GWHAAZE00000009	CDS	47867287	47867320	+
GWHAAZE00000009	CDS	47867438	47867503	+
GWHAAZE00000009	CDS	47868146	47868238	+
GWHAAZE00000009	CDS	47869038	47869226	+

Transcript Sequence
>GWHTAAZE030777 ATGGCACCCCACGATCTCCGCCGCCCGTTCAAACGCCCGGCGATCTCCGACCAACAGAAACGTCGTGACCTCTCTCTACTTCGTCAGTCTCAGAACCGTCGCGACGCTCAGCACCAAGCCCGCTATTTAGCATCCACCGTTCTGTCTCTCAATAACCAAAGTTCAGAGCAATCTGTATCGGAGCCTGAAGCACCGGAACAACTCGAACTTGTACCGGAAATAGAATTAGAAGAGGCCGAAGCCGAAAGTAGCGTAAGGGACATTGATCTACGTCAGTCGGCGAAGCTAAGAGGAGCCGAAGCTCGTCGATGGTTCGCGAAGCAGCTTATGCTTCCGGAGTGGATGATCGATGTGCCTGATCGCCTAAATGATGACTGGTATGTGTTTGCAAGGCCTGCCGGAAAACGGTGCTTTATCGTTTCTTCCAATGGAACAACGGTTAGTAGACTAAGGAATGGCTCTCTATTGCATCGCTTTCCTTCATCTTTACCCAATGGATCCAAATCCAAAGATGCTTCTCGATCTGCTCAATCATATTGTATACTAGACTGCATATTTCATGAGTTGGATCAAACGTATTATGTGATTGACATGGTTTGCTGGGCGGGAATCTCTTTCTATGAATGCACTGCTGAGTTCCGATTTTTTTGGTTGAACAACAAACTTGTTGAGACTAGGGCTTGTGATCCTCCCTCACATTACCATAAGTACAGATTCAGCATGGTTCCAGTGTACAACTGTGACCTGGAAGGACTGCAAACAGCATATGCAGGGGCAGTACCTTATGTAAAGGATGGACTATTGTTTTGTAACAAATCAGCAGATTCATGTTCACTTGCTTCATCTGCTGACGAGACTTGTAGTCAATATGTCATTGATACGGATAGTAAAGGACAGGTTCCACTCCAGCAACAGGTCGTTTTGGAGCTACAAGATGATGGGAAGCTGACTACATATGATGACCCTCCTGTTGTATTTGGATTCTTGAATGGGGAATTCTTACAAAAGATGGGACTGCATTCTGGAGATCTTCTGCGTTTTAACGTTGGTGAAGGAGGATTAAATTTTATGGATGGGAAGCTGGGGAAGGCAGATTTGCAGTACGTTGCCAAGGTCCACAGTGCACGGGCATTTGCAGATAGTTACTCTAAGGTTAGTATATATCACTTTAGATTCCGTACCCTATGGGGGGTTTAG

Network for GWHGAAZE030743

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13151	SNUPN, RNUT1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.396
	SRR3591706	second leaf	10.741
	SRR3591707	mature leaf	14.183
	SRR3591708	Shoot apex	19.913
	SRR3591709	Stem	26.905
	SRR3591710	White floral bud	20.856
	SRR3591711	White flower	25.821
	SRR3591712	Green floral bud	18.199
	SRR3591713	Yellow flower	33.834
SRP173429	SRR8316895	Juvenile bud stage	13.547
	SRR8316896	Juvenile bud stage	20.381
	SRR8316897	Juvenile bud stage	11.516
	SRR8316894	Third green stage	5.738
	SRR8316900	Third green stage	15.850
	SRR8316901	Third green stage	16.151
	SRR8316898	Complete white stage	7.007
	SRR8316899	Complete white stage	28.601
	SRR8316903	Complete white stage	12.905
	SRR8316902	Silver flowering stage	7.495
	SRR8316904	Silver flowering stage	10.100
	SRR8316905	Silver flowering stage	5.303
	SRR8316906	Gold flowering stage	20.838
	SRR8316907	Gold flowering stage	17.339
	SRR8316908	Gold flowering stage	18.416
SRP132670	SRR6706286	Control	12.737
	SRR6706287	Light intensity 50%	14.414
	SRR6706288	Light intensity 20%	16.333
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.119
	CNS0095593	Slightly white alabastrum(diploid) 2	16.568
	CNS0095594	Slightly white alabastrum(diploid) 3	12.847
	CNS0095595	Whole white alabastrum(diploid) 2	10.262
	CNS0095596	Whole white alabastrum(diploid) 3	5.961
	CNS0095597	Whole white alabastrum(diploid) 4	10.816
	CNS0095598	Silvery flower (diploied) 1	10.970
	CNS0095599	Silvery flower (diploied) 2	12.413
	CNS0095600	Silvery flower (diploied) 3	19.230
	CNS0095601	Golden flower (diploid) 1	12.793
	CNS0095602	Golden flower (diploid) 2	18.263
	CNS0095603	Golden flower (diploid) 3	17.785
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.221
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.210
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.076
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.794
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.042
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.662
	CNS0095610	Silvery flower (tetraploid) 1	13.855
	CNS0095611	Silvery flower (tetraploid) 2	15.584
	CNS0095612	Silvery flower (tetraploid) 3	12.489
	CNS0095613	Golden flower (tetraploid) 1	7.904
	CNS0095614	Golden flower (tetraploid) 2	13.861
	CNS0095615	Golden flower (tetraploid) 3	10.661
CRA001975	CRR073297	Stem 1	19.549
	CRR073298	Stem 2	16.580
	CRR073299	Stem 3	18.214
	CRR073300	Leaf 1	21.852
	CRR073301	Leaf 2	19.904
	CRR073302	Leaf 3	16.013
	CRR073303	Juvenile bud 1	18.036
	CRR073304	Juvenile bud 2	11.313
	CRR073305	Juvenile bud 3	20.226
	CRR073306	Third green 1	7.061
	CRR073307	Third green 2	9.950
	CRR073308	Third green 3	9.554
	CRR073309	Second white 1	8.078
	CRR073310	Second white 2	6.857
	CRR073311	Second white 3	6.647
	CRR073312	Silver flowering 1	10.827
	CRR073313	Silver flowering 2	11.533
	CRR073314	Silver flowering 3	9.161
	CRR073315	Gold flowering 1	5.792
	CRR073316	Gold flowering 2	8.764
	CRR073317	Gold flowering 3	7.208
	CRR073318	Tawny withering 1	18.395
	CRR073319	Tawny withering 2	17.648
	CRR073320	Tawny withering 3	19.460