Gene detail

Detail information of GWHGAAZE030745

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP30916.1	3.2761E-161	hypothetical protein JCGZ_11292 [Jatropha curcas]
Swissprot	tr\|Q9FYF9\|FB76_ARATH	8E-147	F-box protein At1g67340
trEMBL	tr\|A0A067K3V7\|A0A067K3V7_JATCU	1E-161	Uncharacterized protein {ECO:0000313\|EMBL:KDP30916.1}
TAIR10	AT1G67340.1	2E-115	HCP-like superfamily protein with MYND-type zinc finger

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	47894861	47896384	-
GWHAAZE00000009	mRNA	47894861	47896384	-
GWHAAZE00000009	exon	47896143	47896384	-
GWHAAZE00000009	exon	47895844	47896006	-
GWHAAZE00000009	exon	47894861	47895709	-
GWHAAZE00000009	five_prime_UTR	47896289	47896384	-
GWHAAZE00000009	CDS	47896143	47896288	-
GWHAAZE00000009	CDS	47895844	47896006	-
GWHAAZE00000009	CDS	47894861	47895709	-

Transcript Sequence
>GWHTAAZE030779 CAGTGTGAGAGGGAGAAAGCTTTATAGCAGCAGCGGCACCACCAGCAGAAGAAAGAAGAATTTTAAAAATATTTTATAGAGAAGAAGGAAGAAGAAATGTTGTACAAGAAGAAACCAAAACCTACAAATGAATTAAGATCTGATTTCTTCGATGGATTGCCTGATGATATTCTCATCTCAATCCTCTGTAAGCTTAGTTCTACAGCCCCCCGTCCTTCAGATTTCATCAATATTCTCCTAACATGCAAGAGGCTCAACCGGCTCGCTCTCAATCCTCTTGTTCTTAACGGAGCCGGTCCAGAAACACTCGCCGTCAGAGCCAAAAACTGGTCGGAGTCCGCTCACCGTTTCCTCAAACAGTGCGTAATCGCCGGCAACGTTGAGGCCTCTTATACCCTCGGAATGATCCGATTTTATTGTCTCCAAAACCGACGGAGCGGAGCATCCTTGATGGCCAAGGCAGCGATTAAGTCTCACGCTCCGGCCCTCTACTCCCTCGCCGTGATTCAGTTCAATGGCAGTGGAGGCCTGAAGAACGCCAAGGACCTACGCGCCGGGGTGGCGTTATGCGCACGCGCTGCCTACCTCGGCCACATCGACGCCCTCAGGGAACTTGGGCACTGCCTCCAAGACGGTTACGGCGTCCGCAAAAGCGTCGCCGAGGGACGGCGCCTCCTAGTCCAGGCAAACGCGCGTGAACTCGCGTGCGTCATACGCGCCTCCTGCAAGGCGTCCTCAACTTCCAACATGCTGACGTGGCAACCAGATATTCAAACGCAAAGAAATGTAGTTGGAAAAAGGGAACCGGGTTCAAGTTTTGGGAGTGCGTTGTGGAGCGATTTTGGATGTCACGTGCCGACACGCGAGGTGCACCCGGTGAACCGGTTCCTGGTGGAGTGGTTCGGGTCGACGAGGCGGGACTACGGGTCGGGTGAAGAAGGGCTGAGAATGTGCTCACATGGAAGTTGCGGCAGAGCGGAGATCCGGAGGAACGAGTTTAGGAGGTGCTCGGGTTGTGGAAAAGTGAACTATTGCTCACGTGGATGTCAAGCGCACGATTGGAAGATGCGCCACAAGGTGGAGTGCGCACCCATGGAACAGTGGATGATGATGATGGATCAGGAGGAGGAAGGTGTTGTTGAGGAAGACGACGGTGAAAATGACGGTAGTGGCGATGATCACACGGTGGAGGCTGAAGATGAAGAAAATGAGGACGATGATTATGATCCTGATCTAACGGTGGAGGTTGAATGA

Network for GWHGAAZE030745

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01753.19	zf-MYND	290	330	2.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.192
	SRR3591706	second leaf	4.216
	SRR3591707	mature leaf	3.073
	SRR3591708	Shoot apex	22.991
	SRR3591709	Stem	5.280
	SRR3591710	White floral bud	6.104
	SRR3591711	White flower	7.804
	SRR3591712	Green floral bud	8.207
	SRR3591713	Yellow flower	12.159
SRP173429	SRR8316895	Juvenile bud stage	4.474
	SRR8316896	Juvenile bud stage	7.846
	SRR8316897	Juvenile bud stage	3.386
	SRR8316894	Third green stage	2.109
	SRR8316900	Third green stage	4.745
	SRR8316901	Third green stage	6.322
	SRR8316898	Complete white stage	1.667
	SRR8316899	Complete white stage	4.978
	SRR8316903	Complete white stage	2.424
	SRR8316902	Silver flowering stage	0.450
	SRR8316904	Silver flowering stage	1.086
	SRR8316905	Silver flowering stage	0.508
	SRR8316906	Gold flowering stage	5.433
	SRR8316907	Gold flowering stage	6.526
	SRR8316908	Gold flowering stage	9.379
SRP132670	SRR6706286	Control	4.375
	SRR6706287	Light intensity 50%	4.589
	SRR6706288	Light intensity 20%	4.256
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.993
	CNS0095593	Slightly white alabastrum(diploid) 2	9.003
	CNS0095594	Slightly white alabastrum(diploid) 3	12.592
	CNS0095595	Whole white alabastrum(diploid) 2	7.392
	CNS0095596	Whole white alabastrum(diploid) 3	6.825
	CNS0095597	Whole white alabastrum(diploid) 4	9.375
	CNS0095598	Silvery flower (diploied) 1	11.390
	CNS0095599	Silvery flower (diploied) 2	9.206
	CNS0095600	Silvery flower (diploied) 3	3.504
	CNS0095601	Golden flower (diploid) 1	15.420
	CNS0095602	Golden flower (diploid) 2	8.851
	CNS0095603	Golden flower (diploid) 3	9.363
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.046
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.402
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.444
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.949
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.842
	CNS0095610	Silvery flower (tetraploid) 1	1.847
	CNS0095611	Silvery flower (tetraploid) 2	1.611
	CNS0095612	Silvery flower (tetraploid) 3	1.974
	CNS0095613	Golden flower (tetraploid) 1	3.908
	CNS0095614	Golden flower (tetraploid) 2	3.553
	CNS0095615	Golden flower (tetraploid) 3	8.861
CRA001975	CRR073297	Stem 1	15.371
	CRR073298	Stem 2	12.788
	CRR073299	Stem 3	16.249
	CRR073300	Leaf 1	8.564
	CRR073301	Leaf 2	10.565
	CRR073302	Leaf 3	4.433
	CRR073303	Juvenile bud 1	5.881
	CRR073304	Juvenile bud 2	3.113
	CRR073305	Juvenile bud 3	7.040
	CRR073306	Third green 1	0.668
	CRR073307	Third green 2	0.755
	CRR073308	Third green 3	1.350
	CRR073309	Second white 1	0.247
	CRR073310	Second white 2	1.249
	CRR073311	Second white 3	0.665
	CRR073312	Silver flowering 1	2.117
	CRR073313	Silver flowering 2	1.120
	CRR073314	Silver flowering 3	2.154
	CRR073315	Gold flowering 1	1.628
	CRR073316	Gold flowering 2	3.334
	CRR073317	Gold flowering 3	2.837
	CRR073318	Tawny withering 1	9.109
	CRR073319	Tawny withering 2	7.040
	CRR073320	Tawny withering 3	7.284