Gene detail

Detail information of GWHGAAZE030758

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280160.1	4.3539E-126	PREDICTED: squamosa promoter-binding-like protein 13A [Vitis vinifera]
Swissprot	tr\|P0DI11\|SP13B_ARATH	2E-63	Squamosa promoter-binding-like protein 13B
trEMBL	tr\|A5BME3\|A5BME3_VITVI	2E-126	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN77059.1}
TAIR10	AT5G50570.2	3E-54	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48028956	48031959	-
GWHAAZE00000009	mRNA	48028956	48031959	-
GWHAAZE00000009	exon	48031547	48031959	-
GWHAAZE00000009	exon	48030151	48030284	-
GWHAAZE00000009	exon	48028956	48029813	-
GWHAAZE00000009	CDS	48031547	48031959	-
GWHAAZE00000009	CDS	48030151	48030284	-
GWHAAZE00000009	CDS	48029218	48029813	-
GWHAAZE00000009	three_prime_UTR	48028956	48029217	-

Transcript Sequence
>GWHTAAZE030792 ATGGACTGGAATTTGAAGACACCTTCTTGGGATTTAACTCAATTTGTACAAGAACCCATTCCGAATATCGATTCAGGCAGTGGGTCGAGTAGCTATGAAGTTCGTGGGATTAAGGGCGATTTTTCGGTGGATTTGAAGCTAGGCCAAGTGATCGATTCGGGCACTGATTTAGGGGACAATTTAAAGGTAACAAGTGTTTCGAAAATGGCATTATCACCGTCGGGATCATCCAAAAGGGCACGGCCAATTAACAACGGAGTTCACATAGCCTCGTGCCTCGTTGATGGGTGCACTGCGGACCTTAGTAACTGCAGGGACTACCATAGGCGCCACAAAGTGTGTGAACTCCACTCTAAGACTCCACAGGTTACAATCAACGGGGACAACAAACGGTTCTGCCAGCAATGTAGCAGGTTCCATGCACTAGAGGAATTCGACGAGGGAAAGAGAAGCTGCCGGAAGCGTCTTGATGGACATAACCGTCGAAGAAGGAAGCCTCAGCCAGAACCCCTGTCTCGCGTCGGAAGTTTTTTATCAAGTAACCAAGGTACAAGATACTTGGCATTCTCCAGTCCTCAAGTATATCCAACCACTACAATGGCGAACACGATCTGGGCCGGAGTAACCAAACCTGACAATGATATTAAGCCTTATAACCGCCACTCACATTCGCGCCTACAAGACAAACACTATCCTTTTCATGAATCGTCGAGCCGAGATAGAGGAGGCGAGCGGTTCAGTTTCTTGCACAGCACCAACCTCGAACTCAGCAACCAAAGTGCCCGAGAAGCTTTTATGTGCCAACCGCTCCTCAAGACTCCACCAGAAAGTGGTTCTTCCAGTACCAGCAAAATGTTGTGTGATGGGTTTTCGAACTCAGACTGTGCTCTCTCTCTTCTGTCATCATCACCAACACAAGTGTCAAGTATGGGCTTGAGCCAACCGGTGCACCCTGGCTCAATCCCTGCAACGCATATGTTAACTCCAGGCCTGAATTATGGTGGTGGTCTGCAGCACATGGACTCGGTTGATCTGGTTCCTAATGCCGGAGATGCTGATGACGTGGTTCATTGCCAGCGAATGTTTCACATGGCACCTCATGCACCTCGCGATGATAATGAAGCGCCCTTTTTTTGGGATTAGTTGAATCAAGTTACTGATTCTTTTGCAACTTTTTTGGGTATGAATGTGTTGTAATATGCTGGGTAATGTAGTACTGTTTTTCAACGCTATTGTTATGGGAATTTTCAGTTCTGGTAGGTACCTTCCTCCTTACTATGTTTGGATCTAAGCCTTTTAATTGAATTTTATGCCGATGATCTCTCCCTTCGACCGTGACTTTTTTGAACTTGATCTTAGAACTGCGAGTGTGCTACTCTTAATGTGGGACACAAGGGCACAATTG

Network for GWHGAAZE030758

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	92	165	1.10E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.285
	SRR3591706	second leaf	19.318
	SRR3591707	mature leaf	15.851
	SRR3591708	Shoot apex	36.389
	SRR3591709	Stem	13.957
	SRR3591710	White floral bud	17.351
	SRR3591711	White flower	40.174
	SRR3591712	Green floral bud	10.188
	SRR3591713	Yellow flower	26.174
SRP173429	SRR8316895	Juvenile bud stage	12.701
	SRR8316896	Juvenile bud stage	10.188
	SRR8316897	Juvenile bud stage	3.077
	SRR8316894	Third green stage	3.710
	SRR8316900	Third green stage	6.667
	SRR8316901	Third green stage	6.986
	SRR8316898	Complete white stage	0.564
	SRR8316899	Complete white stage	12.195
	SRR8316903	Complete white stage	3.446
	SRR8316902	Silver flowering stage	2.505
	SRR8316904	Silver flowering stage	2.249
	SRR8316905	Silver flowering stage	0.664
	SRR8316906	Gold flowering stage	5.230
	SRR8316907	Gold flowering stage	7.183
	SRR8316908	Gold flowering stage	5.110
SRP132670	SRR6706286	Control	7.258
	SRR6706287	Light intensity 50%	8.087
	SRR6706288	Light intensity 20%	7.193
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.952
	CNS0095593	Slightly white alabastrum(diploid) 2	14.912
	CNS0095594	Slightly white alabastrum(diploid) 3	8.250
	CNS0095595	Whole white alabastrum(diploid) 2	8.567
	CNS0095596	Whole white alabastrum(diploid) 3	4.724
	CNS0095597	Whole white alabastrum(diploid) 4	9.976
	CNS0095598	Silvery flower (diploied) 1	23.311
	CNS0095599	Silvery flower (diploied) 2	13.776
	CNS0095600	Silvery flower (diploied) 3	10.377
	CNS0095601	Golden flower (diploid) 1	20.202
	CNS0095602	Golden flower (diploid) 2	23.218
	CNS0095603	Golden flower (diploid) 3	21.640
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.481
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.739
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.218
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.913
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.395
	CNS0095610	Silvery flower (tetraploid) 1	13.410
	CNS0095611	Silvery flower (tetraploid) 2	16.248
	CNS0095612	Silvery flower (tetraploid) 3	10.310
	CNS0095613	Golden flower (tetraploid) 1	8.491
	CNS0095614	Golden flower (tetraploid) 2	15.212
	CNS0095615	Golden flower (tetraploid) 3	2.590
CRA001975	CRR073297	Stem 1	17.766
	CRR073298	Stem 2	12.756
	CRR073299	Stem 3	18.474
	CRR073300	Leaf 1	7.943
	CRR073301	Leaf 2	10.401
	CRR073302	Leaf 3	5.964
	CRR073303	Juvenile bud 1	7.925
	CRR073304	Juvenile bud 2	4.926
	CRR073305	Juvenile bud 3	10.053
	CRR073306	Third green 1	7.584
	CRR073307	Third green 2	14.874
	CRR073308	Third green 3	9.898
	CRR073309	Second white 1	6.732
	CRR073310	Second white 2	4.471
	CRR073311	Second white 3	4.144
	CRR073312	Silver flowering 1	2.855
	CRR073313	Silver flowering 2	3.621
	CRR073314	Silver flowering 3	2.828
	CRR073315	Gold flowering 1	6.014
	CRR073316	Gold flowering 2	7.259
	CRR073317	Gold flowering 3	5.934
	CRR073318	Tawny withering 1	9.562
	CRR073319	Tawny withering 2	8.153
	CRR073320	Tawny withering 3	10.931