Detail information of GWHGAAZE030759


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283867.10PREDICTED: UDP-arabinopyranose mutase 1 isoform X2 [Vitis vinifera]
COGYP_004596549.14E-17alpha-1,4-glucan-protein synthase
Swissprottr|Q8H8T0|RGP1_ORYSJ0UDP-arabinopyranose mutase 1
trEMBLtr|F6GSW1|F6GSW1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43330.1}
TAIR10AT3G02230.10reversibly glycosylated polypeptide 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4805502148057493-
GWHAAZE00000009mRNA4805502148057493-
GWHAAZE00000009exon4805717048057493-
GWHAAZE00000009exon4805596948056219-
GWHAAZE00000009exon4805556448055732-
GWHAAZE00000009exon4805502148055386-
GWHAAZE00000009CDS4805717048057493-
GWHAAZE00000009CDS4805596948056219-
GWHAAZE00000009CDS4805556448055732-
GWHAAZE00000009CDS4805502148055386-
Transcript Sequence

Network for GWHGAAZE030759

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03214.14RGP133469.60E-180
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13379RGP, UTM Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0071669biological_processplant-type cell wall organization or biogenesis
GO:0016866molecular_functionintramolecular transferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf85.857
SRR3591706second leaf32.499
SRR3591707mature leaf22.609
SRR3591708Shoot apex64.075
SRR3591709Stem67.387
SRR3591710White floral bud990.668
SRR3591711White flower784.460
SRR3591712Green floral bud182.450
SRR3591713Yellow flower387.796
SRP173429 SRR8316895Juvenile bud stage 64.924
SRR8316896Juvenile bud stage 68.862
SRR8316897Juvenile bud stage 49.865
SRR8316894Third green stage 25.958
SRR8316900Third green stage 92.532
SRR8316901Third green stage 100.093
SRR8316898Complete white stage 288.969
SRR8316899Complete white stage 120.319
SRR8316903Complete white stage 398.626
SRR8316902Silver flowering stage653.116
SRR8316904Silver flowering stage903.663
SRR8316905Silver flowering stage331.886
SRR8316906Gold flowering stage 597.675
SRR8316907Gold flowering stage 906.942
SRR8316908Gold flowering stage 647.899
SRP132670SRR6706286Control124.612
SRR6706287Light intensity 50%147.825
SRR6706288Light intensity 20%108.424
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1108.208
CNS0095593Slightly white alabastrum(diploid) 2109.069
CNS0095594Slightly white alabastrum(diploid) 388.814
CNS0095595Whole white alabastrum(diploid) 291.701
CNS0095596Whole white alabastrum(diploid) 370.913
CNS0095597Whole white alabastrum(diploid) 464.273
CNS0095598Silvery flower (diploied) 1303.460
CNS0095599Silvery flower (diploied) 2297.113
CNS0095600Silvery flower (diploied) 3504.137
CNS0095601Golden flower (diploid) 1211.777
CNS0095602Golden flower (diploid) 2313.437
CNS0095603Golden flower (diploid) 3307.667
CNS0095604Slightly white alabastrum(tetraploid) 163.879
CNS0095605Slightly white alabastrum(tetraploid) 263.404
CNS0095606Slightly white alabastrum(tetraploid) 3102.657
CNS0095607Whole white alabastrum(tetraploid) 147.206
CNS0095608Whole white alabastrum(tetraploid) 233.044
CNS0095609Whole white alabastrum(tetraploid) 398.485
CNS0095610Silvery flower (tetraploid) 1670.824
CNS0095611Silvery flower (tetraploid) 2305.431
CNS0095612Silvery flower (tetraploid) 3545.278
CNS0095613Golden flower (tetraploid) 1184.059
CNS0095614Golden flower (tetraploid) 2615.936
CNS0095615Golden flower (tetraploid) 3471.685
CRA001975CRR073297Stem 1185.931
CRR073298Stem 2172.936
CRR073299Stem 3206.166
CRR073300Leaf 1237.344
CRR073301Leaf 2303.413
CRR073302Leaf 3277.562
CRR073303Juvenile bud 1239.794
CRR073304Juvenile bud 2479.120
CRR073305Juvenile bud 3253.903
CRR073306Third green 13033.721
CRR073307Third green 22525.184
CRR073308Third green 32977.369
CRR073309Second white 13135.860
CRR073310Second white 21222.845
CRR073311Second white 31556.271
CRR073312Silver flowering 12384.460
CRR073313Silver flowering 22130.079
CRR073314Silver flowering 31668.039
CRR073315Gold flowering 193.640
CRR073316Gold flowering 2150.260
CRR073317Gold flowering 399.321
CRR073318Tawny withering 1234.680
CRR073319Tawny withering 2224.814
CRR073320Tawny withering 3184.346