Detail information of GWHGAAZE030768


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007038042.10Domain of Uncharacterized protein function, putative [Theobroma cacao]
Swissprottr|Q5XUX6|RMI1_ARATH7E-101RecQ-mediated genome instability protein 1
trEMBLtr|A0A061FZP6|A0A061FZP6_THECC0Domain of Uncharacterized protein function, putative {ECO:0000313|EMBL:EOY22543.1}
TAIR10AT5G63540.11E-75Domain of unknown function (DUF1767)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4815201348156834-
GWHAAZE00000009mRNA4815201348156834-
GWHAAZE00000009exon4815600448156834-
GWHAAZE00000009exon4815518848155358-
GWHAAZE00000009exon4815463748154782-
GWHAAZE00000009exon4815436548154501-
GWHAAZE00000009exon4815341848153671-
GWHAAZE00000009exon4815284848152958-
GWHAAZE00000009exon4815264048152768-
GWHAAZE00000009exon4815201348152532-
GWHAAZE00000009CDS4815600448156834-
GWHAAZE00000009CDS4815518848155358-
GWHAAZE00000009CDS4815463748154782-
GWHAAZE00000009CDS4815436548154501-
GWHAAZE00000009CDS4815341848153671-
GWHAAZE00000009CDS4815284848152958-
GWHAAZE00000009CDS4815264048152768-
GWHAAZE00000009CDS4815236848152532-
GWHAAZE00000009three_prime_UTR4815201348152367-
Transcript Sequence

Network for GWHGAAZE030768

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08585.13RMI1_N2073694.50E-36
PF16099.6RMI1_C4856276.60E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10990RMI1, BRAP75 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0000166molecular_functionnucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.908
SRR3591706second leaf0.930
SRR3591707mature leaf1.306
SRR3591708Shoot apex7.355
SRR3591709Stem1.675
SRR3591710White floral bud4.077
SRR3591711White flower4.999
SRR3591712Green floral bud2.773
SRR3591713Yellow flower4.122
SRP173429 SRR8316895Juvenile bud stage 1.690
SRR8316896Juvenile bud stage 2.086
SRR8316897Juvenile bud stage 0.721
SRR8316894Third green stage 0.860
SRR8316900Third green stage 3.846
SRR8316901Third green stage 2.497
SRR8316898Complete white stage 2.029
SRR8316899Complete white stage 5.146
SRR8316903Complete white stage 3.552
SRR8316902Silver flowering stage2.237
SRR8316904Silver flowering stage2.823
SRR8316905Silver flowering stage1.423
SRR8316906Gold flowering stage 4.044
SRR8316907Gold flowering stage 3.567
SRR8316908Gold flowering stage 3.289
SRP132670SRR6706286Control2.695
SRR6706287Light intensity 50%3.005
SRR6706288Light intensity 20%2.905
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.398
CNS0095593Slightly white alabastrum(diploid) 21.155
CNS0095594Slightly white alabastrum(diploid) 31.411
CNS0095595Whole white alabastrum(diploid) 21.723
CNS0095596Whole white alabastrum(diploid) 31.472
CNS0095597Whole white alabastrum(diploid) 41.708
CNS0095598Silvery flower (diploied) 11.439
CNS0095599Silvery flower (diploied) 22.318
CNS0095600Silvery flower (diploied) 34.442
CNS0095601Golden flower (diploid) 10.971
CNS0095602Golden flower (diploid) 22.494
CNS0095603Golden flower (diploid) 32.777
CNS0095604Slightly white alabastrum(tetraploid) 11.305
CNS0095605Slightly white alabastrum(tetraploid) 20.812
CNS0095606Slightly white alabastrum(tetraploid) 33.086
CNS0095607Whole white alabastrum(tetraploid) 10.590
CNS0095608Whole white alabastrum(tetraploid) 20.982
CNS0095609Whole white alabastrum(tetraploid) 31.311
CNS0095610Silvery flower (tetraploid) 15.874
CNS0095611Silvery flower (tetraploid) 26.112
CNS0095612Silvery flower (tetraploid) 36.713
CNS0095613Golden flower (tetraploid) 12.219
CNS0095614Golden flower (tetraploid) 23.030
CNS0095615Golden flower (tetraploid) 32.827
CRA001975CRR073297Stem 13.519
CRR073298Stem 21.997
CRR073299Stem 32.485
CRR073300Leaf 12.523
CRR073301Leaf 21.963
CRR073302Leaf 31.901
CRR073303Juvenile bud 12.727
CRR073304Juvenile bud 22.037
CRR073305Juvenile bud 33.469
CRR073306Third green 11.507
CRR073307Third green 20.819
CRR073308Third green 31.134
CRR073309Second white 12.223
CRR073310Second white 21.615
CRR073311Second white 32.349
CRR073312Silver flowering 11.252
CRR073313Silver flowering 21.815
CRR073314Silver flowering 31.423
CRR073315Gold flowering 11.192
CRR073316Gold flowering 21.814
CRR073317Gold flowering 30.943
CRR073318Tawny withering 12.154
CRR073319Tawny withering 21.732
CRR073320Tawny withering 32.596