Gene detail

Detail information of GWHGAAZE030779

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804117.1	0	PREDICTED: probable serine/threonine-protein kinase At1g54610 [Nicotiana sylvestris]
COG	YP_005004992.1	3E-23	phosphotransferase enzyme family protein
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	0	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|A0A068TRX4\|A0A068TRX4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98674.1}
TAIR10	AT5G50860.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48369052	48372940	-
GWHAAZE00000009	mRNA	48369052	48372940	-
GWHAAZE00000009	exon	48372554	48372940	-
GWHAAZE00000009	exon	48372169	48372453	-
GWHAAZE00000009	exon	48370556	48370873	-
GWHAAZE00000009	exon	48370241	48370468	-
GWHAAZE00000009	exon	48369687	48369787	-
GWHAAZE00000009	exon	48369481	48369603	-
GWHAAZE00000009	exon	48369052	48369406	-
GWHAAZE00000009	five_prime_UTR	48372845	48372940	-
GWHAAZE00000009	CDS	48372554	48372844	-
GWHAAZE00000009	CDS	48372169	48372453	-
GWHAAZE00000009	CDS	48370556	48370873	-
GWHAAZE00000009	CDS	48370241	48370468	-
GWHAAZE00000009	CDS	48369687	48369787	-
GWHAAZE00000009	CDS	48369481	48369603	-
GWHAAZE00000009	CDS	48369052	48369406	-

Transcript Sequence
>GWHTAAZE030813 CTAACGATACCGCTAGATGTTTTTCAGCTAACTGATTCTCGCACAACCTCGCCGGAATACCACTCTGTTTTTCTCCCACACATGCAAAGCTGAGGAATGGGCTGCGTTCTCGGCACAATATACACCGGAGATCACCGGAAAGAATCCCGCAGACCTCCACCTCATCGCCGGAAAGAGATTCCAGATGCTGTCACCAACACCGTTACAGTAACGACCGCGAGAGAGGAAGAGAATATCCCCGCCGGCAACTTACCGCCGGCGAAACTTCAGCCAAAGTATTGCCTGAAGGTTAAGGAAGGTTGGCCGTCCTGGTTGTGCACAGCGGCCGGCGATGCCATCAAGGATTGGCCCCCCCGCCGCGCAAGTACCTTCGAGAAGCTCGATAAGATAGGTCATGGTACATATAGCAATGTATATAAAGCGAGAGATTTAATTACAGGGAAGATAGTTGCTCTGAAGAAGGTTAGATTCGATAATTTGGAAGCGGAGAGTGTGAAGTTTATGGCGAGAGAGATTCTAATTTTGAAGAAATTAAATCATCCAAATGTAATTAAGCTTGAAGGATTGGTTACTTCCCGAATGTCTTCTAGTCTTTATCTTATATTTGAGTATATGGAGCATGATCTCTCTGGCCTCACTGCCTTTCAAGGCATCCAGTTCACAGAATCACAGGTGAAATGCTATATGAAGCAATTACTCTCTGGGCTTGAACATTGCCACAATCATGGGGTCCTTCACCGTGATATCAAGGGTTCCAATTTGCTTATTGACAACCAAGGAATCCTTAAAATAGCTGATTTTGGACTGTCTTGTTTTTATGATCCTCAACATAAGCAACCCATGACTAGTCGCGTTGTCACCCTGTGGTACCGTCCCCCTGAGCTTCTTCTTGGGGCCACTCATTATGGAGTTGGCGTTGACCTTTGGAGTGCTGGTTGCATTTTGGGAGAGTTACTTTCTGGAAAACCAATAATGCCAGGGCGGACTGAGGTTGAGCAAGTGCACAAGATATTTAAGTTATGTGGCTCCCCGTCCGAGGAATATTGGAAGAAATCCCGGTTTCCAAGAGCAACACTTTTCAAACCACAGCAGCCATATAAGTGCTGTGTAGTTGAAACTTTCAAGGATTTTCCACCTTCTTCTGTATCTTTGCTCGAAATTCTTCTTTCAATCAACCCTGATGAACGAGGCTCTGCCACAACAGCTTTAAATAGCCAATTCTTTACTACCGAACCTTATGCATGTGAGCCATCAAGTTTACCAAGATATCCTCCCAGCAAAGAAATTGACTTGAAGTTGAGAGATGAAGAAGCCAAAAGGAAAAAGCTAATGAGTGGGAAAGCTCATGTTGTCAATTGCGCGAGAAAAGCTAGAGTCCATGATCGAAGGAGTGGGCCATGCCTGCTCCAGAAGCCAATGCAGAGCTTCAAACAAACTTGGATGTGGAGAGGTGTGATGCAACATAAAGGTACAAGTAAGAGCGAAAAATTCCCACCACCTCATCAAGATGGAGCAGTAGGGCACCCTGTCAATGTAGCAGATAATGGCCCTGTAACATTCGGTGGCGCTGATAATTCATTTAGCTCATCAATATATGATGATCCGTCACAATCTATTAAAGATACTGCAAGCACCGGTGGACCTTCCAGGAGGAGAAAAGGCAAGAATGAACAGTCCTCAATGGCTCCATCCGTAAAGTCTTTTCGGTCCTTTATTCCAACTTCGATTAGTCTAACGATGGATAGCAGATTTAAGGGTAAAGAATCGGTTTCTGAAATTTTTGGCCGTCGAAAATAG

Network for GWHGAAZE030779

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	92	376	8.60E-68

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.802
	SRR3591706	second leaf	6.320
	SRR3591707	mature leaf	2.437
	SRR3591708	Shoot apex	6.765
	SRR3591709	Stem	3.140
	SRR3591710	White floral bud	1.917
	SRR3591711	White flower	3.677
	SRR3591712	Green floral bud	4.594
	SRR3591713	Yellow flower	1.868
SRP173429	SRR8316895	Juvenile bud stage	2.798
	SRR8316896	Juvenile bud stage	2.524
	SRR8316897	Juvenile bud stage	2.167
	SRR8316894	Third green stage	1.718
	SRR8316900	Third green stage	5.431
	SRR8316901	Third green stage	4.142
	SRR8316898	Complete white stage	0.261
	SRR8316899	Complete white stage	4.564
	SRR8316903	Complete white stage	0.552
	SRR8316902	Silver flowering stage	0.939
	SRR8316904	Silver flowering stage	1.221
	SRR8316905	Silver flowering stage	0.746
	SRR8316906	Gold flowering stage	4.777
	SRR8316907	Gold flowering stage	3.085
	SRR8316908	Gold flowering stage	4.399
SRP132670	SRR6706286	Control	4.066
	SRR6706287	Light intensity 50%	4.172
	SRR6706288	Light intensity 20%	5.636
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.694
	CNS0095593	Slightly white alabastrum(diploid) 2	2.036
	CNS0095594	Slightly white alabastrum(diploid) 3	3.359
	CNS0095595	Whole white alabastrum(diploid) 2	2.095
	CNS0095596	Whole white alabastrum(diploid) 3	2.220
	CNS0095597	Whole white alabastrum(diploid) 4	2.235
	CNS0095598	Silvery flower (diploied) 1	2.102
	CNS0095599	Silvery flower (diploied) 2	2.536
	CNS0095600	Silvery flower (diploied) 3	1.408
	CNS0095601	Golden flower (diploid) 1	1.712
	CNS0095602	Golden flower (diploid) 2	2.352
	CNS0095603	Golden flower (diploid) 3	2.403
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.355
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.301
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.956
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.180
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.434
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.628
	CNS0095610	Silvery flower (tetraploid) 1	1.091
	CNS0095611	Silvery flower (tetraploid) 2	1.553
	CNS0095612	Silvery flower (tetraploid) 3	0.685
	CNS0095613	Golden flower (tetraploid) 1	0.886
	CNS0095614	Golden flower (tetraploid) 2	1.867
	CNS0095615	Golden flower (tetraploid) 3	0.489
CRA001975	CRR073297	Stem 1	3.671
	CRR073298	Stem 2	3.367
	CRR073299	Stem 3	3.348
	CRR073300	Leaf 1	4.036
	CRR073301	Leaf 2	4.083
	CRR073302	Leaf 3	1.951
	CRR073303	Juvenile bud 1	1.966
	CRR073304	Juvenile bud 2	1.482
	CRR073305	Juvenile bud 3	2.343
	CRR073306	Third green 1	0.118
	CRR073307	Third green 2	0.111
	CRR073308	Third green 3	0.127
	CRR073309	Second white 1	0.744
	CRR073310	Second white 2	1.224
	CRR073311	Second white 3	0.399
	CRR073312	Silver flowering 1	0.530
	CRR073313	Silver flowering 2	0.512
	CRR073314	Silver flowering 3	0.245
	CRR073315	Gold flowering 1	2.397
	CRR073316	Gold flowering 2	3.886
	CRR073317	Gold flowering 3	3.035
	CRR073318	Tawny withering 1	4.743
	CRR073319	Tawny withering 2	3.552
	CRR073320	Tawny withering 3	2.751