Gene detail

Detail information of GWHGAAZE030804

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073193.1	0	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Sesamum indicum]
COG	YP_007090512.1	0.000005	WD-40 repeat-containing protein
trEMBL	tr\|A0A068TQK8\|A0A068TQK8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98307.1}
TAIR10	AT5G50970.1	4E-164	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48666824	48671331	+
GWHAAZE00000009	mRNA	48666824	48671331	+
GWHAAZE00000009	exon	48666824	48667134	+
GWHAAZE00000009	exon	48667988	48668399	+
GWHAAZE00000009	exon	48668562	48668718	+
GWHAAZE00000009	exon	48669053	48669097	+
GWHAAZE00000009	exon	48669386	48669551	+
GWHAAZE00000009	exon	48669997	48670364	+
GWHAAZE00000009	exon	48671013	48671331	+
GWHAAZE00000009	five_prime_UTR	48666824	48666924	+
GWHAAZE00000009	CDS	48666925	48667134	+
GWHAAZE00000009	CDS	48667988	48668399	+
GWHAAZE00000009	CDS	48668562	48668718	+
GWHAAZE00000009	CDS	48669053	48669097	+
GWHAAZE00000009	CDS	48669386	48669551	+
GWHAAZE00000009	CDS	48669997	48670364	+
GWHAAZE00000009	CDS	48671013	48671331	+

Transcript Sequence
>GWHTAAZE030838 TGAGACCTTGAAATGGACATGAACTATCCGTCATTAAACTGCTAATCTCGAAAACATTTGAGGTTACCCGAACCCAAAAATTTAAGAAGTCGAGGAGAAAGATGAGAGAAATGAGCTCGCCTCCGGTGCTAAAGAAACCCAAGACTGAGAGAAGAGAAGATTCCAACGGAGGAGGAAGAGTTGCCATGGCAATGGCCGACGATAATGGAGACAGTAGAGATGACCAGGAAGAAGCCCTCGTGGCTCTAATCGAACACCGCACCAAAGAAGTTGAACATATACGCAAACGTATCGCCTATTATCAAGCCCAGCTTGATGAAGCAGAGAGGAGGTTGGAGGATTCACAAATTAAATTGGTCCGTCTCAGAAACCAAGCCAATGTAATGTCATCCAAAAATTCTAAGGGAGATGGTTTGAAAAGCATAAAAGTTGAGCAAAGATCACCAAGTCCTATCCAAATCAGTGAGGATTCTGCTTCTCCCCCACACCAGGCTCGCTCTAAACCAAAACTTGTAATTCCCGCTGCAAATGTAAAAAAATATCAAGCTATGAAGCCGTCAGAGCCTTCCCCTAAAGCTTCAACTTTATCTGGTTCTCGATCTAGTACATCACCGTCTACCCATGTTAATAGTATTGTGAAAGTGAAAGGGGAGAAGTCTTATAGAATCACTTCTGAGCAAGAAACTATGGAAGTTGAAGCCAAAGGGACAAAAAGGAAGCTTGTGCAGAAAGAAGGCATTGATTTAATTCCGCTGATATCTACCCGCTCCTCACCACGGAAAATCATTTGTGAAACAGGTTCTCTCATCCCTAGTCAACACAAGAGAAAGTTGAGAAGTCTCGTATTGTGTCCCACAAATGATAAGCTTTTTGTGACCAGTGCTTTGGATGGAGTTGTCAACTTGTGGCAAGTTGAAGGCAGAGGATCAAGTGCCACTCTTCTAAGTAGTAGTGATTGTGCATCCCTCAAGCAGAGGAGATGGCCTGAAGATATGGCCTGGCATCCACGCGGAAAAAACCTATTTTCTGTTTACAGTGCTGATGGTGGGGACTCTCAGATATCAGTCCTAGATTTGAACCAAAAATTTGAGAGAACACCTGCGAGTTTCTTGAAGGATAAGCCTCACGTTAAGGGAATTATTAACAGCATAGTGTTCATGCCATGGGCGGATACCTATTTCGTTACTGGTGGAAGTGATCATGCTGTAGTTATCTGGACTGAGAAAGACGAGAACTCGTGGAAACCAAAATTATTGCACAAGAGTGTGCATTCTTCGGCTGTAATGGGAGTTGCCGGGGTTCATCATAAGCAGACTGTAATGTCTGCTGGTGCTGACAAAAGGATTATCGGGTTTGATTTGCTTGCTGAGAGAGCAGATTACAAGCATCAAATAGAAAGCAAATGCATGAGCGTTCTACCAAATCCATGCGACTTCAATCTCGTTATGGTTCAGACAGGGTCTCCAGAGAGGCAGCTTCGTTTGTTTGATATAAGGTTGAAGCAGGATGAAATCCATGCATTTGGTTGGAAACAAGAAAGCAGTGAATCTCAGTCTGCCTTAATAAACCAGGCGTGGTCGCCTGATGGTTTATACATAACTTCCGGCTCAGCAGATCCAATGATCCACGTATTCGATATCAGATTTAACGCCCACAATCCTTCCCAATCAATACGCGCTCACCAGAAGCGCGTATTCAAAGCTGTATGGCACCATACACTCCCCCTTCTAATATCCATATCTTCAGATTTGAACATTGGATTGCACAAGTTCACTTAA

Network for GWHGAAZE030804

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.414
	SRR3591706	second leaf	0.385
	SRR3591707	mature leaf	0.099
	SRR3591708	Shoot apex	3.193
	SRR3591709	Stem	1.000
	SRR3591710	White floral bud	0.310
	SRR3591711	White flower	0.788
	SRR3591712	Green floral bud	1.103
	SRR3591713	Yellow flower	0.400
SRP173429	SRR8316895	Juvenile bud stage	2.879
	SRR8316896	Juvenile bud stage	3.097
	SRR8316897	Juvenile bud stage	1.271
	SRR8316894	Third green stage	0.880
	SRR8316900	Third green stage	1.453
	SRR8316901	Third green stage	1.672
	SRR8316898	Complete white stage	0.144
	SRR8316899	Complete white stage	1.710
	SRR8316903	Complete white stage	0.524
	SRR8316902	Silver flowering stage	0.052
	SRR8316904	Silver flowering stage	0.396
	SRR8316905	Silver flowering stage	0.110
	SRR8316906	Gold flowering stage	0.242
	SRR8316907	Gold flowering stage	0.040
	SRR8316908	Gold flowering stage	0.110
SRP132670	SRR6706286	Control	2.035
	SRR6706287	Light intensity 50%	1.292
	SRR6706288	Light intensity 20%	1.843
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.776
	CNS0095593	Slightly white alabastrum(diploid) 2	2.094
	CNS0095594	Slightly white alabastrum(diploid) 3	1.687
	CNS0095595	Whole white alabastrum(diploid) 2	0.916
	CNS0095596	Whole white alabastrum(diploid) 3	0.963
	CNS0095597	Whole white alabastrum(diploid) 4	0.704
	CNS0095598	Silvery flower (diploied) 1	0.919
	CNS0095599	Silvery flower (diploied) 2	1.186
	CNS0095600	Silvery flower (diploied) 3	0.906
	CNS0095601	Golden flower (diploid) 1	0.475
	CNS0095602	Golden flower (diploid) 2	0.540
	CNS0095603	Golden flower (diploid) 3	0.646
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.063
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.557
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.616
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.155
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.157
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.511
	CNS0095610	Silvery flower (tetraploid) 1	0.546
	CNS0095611	Silvery flower (tetraploid) 2	0.402
	CNS0095612	Silvery flower (tetraploid) 3	0.228
	CNS0095613	Golden flower (tetraploid) 1	0.092
	CNS0095614	Golden flower (tetraploid) 2	0.254
	CNS0095615	Golden flower (tetraploid) 3	0.111
CRA001975	CRR073297	Stem 1	4.705
	CRR073298	Stem 2	4.087
	CRR073299	Stem 3	5.230
	CRR073300	Leaf 1	2.824
	CRR073301	Leaf 2	2.759
	CRR073302	Leaf 3	1.742
	CRR073303	Juvenile bud 1	2.551
	CRR073304	Juvenile bud 2	1.137
	CRR073305	Juvenile bud 3	1.882
	CRR073306	Third green 1	0.529
	CRR073307	Third green 2	0.935
	CRR073308	Third green 3	0.829
	CRR073309	Second white 1	0.119
	CRR073310	Second white 2	0.076
	CRR073311	Second white 3	0.030
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.148
	CRR073314	Silver flowering 3	0.152
	CRR073315	Gold flowering 1	0.247
	CRR073316	Gold flowering 2	0.199
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.478
	CRR073319	Tawny withering 2	1.224
	CRR073320	Tawny withering 3	1.517