Detail information of GWHGAAZE030807


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010249247.10PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Nelumbo nucifera]
COGNP_295256.17E-29hypothetical protein DR_1533
Swissprottr|Q8VYZ0|ORTH2_ARATH0E3 ubiquitin-protein ligase ORTHRUS 2
trEMBLtr|B9SU90|B9SU90_RICCO0Zinc finger protein, putative {ECO:0000313|EMBL:EEF32828.1}
TAIR10AT1G57820.10Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4873107848736739-
GWHAAZE00000009mRNA4873107848736739-
GWHAAZE00000009exon4873107848731311-
GWHAAZE00000009exon4873153948731753-
GWHAAZE00000009exon4873202648732170-
GWHAAZE00000009exon4873243748732539-
GWHAAZE00000009exon4873262048732681-
GWHAAZE00000009exon4873277648732875-
GWHAAZE00000009exon4873301348733138-
GWHAAZE00000009exon4873431348734845-
GWHAAZE00000009exon4873631148736739-
GWHAAZE00000009CDS4873631148736739-
GWHAAZE00000009CDS4873431348734845-
GWHAAZE00000009CDS4873301348733138-
GWHAAZE00000009CDS4873277648732875-
GWHAAZE00000009CDS4873262048732681-
GWHAAZE00000009CDS4873243748732539-
GWHAAZE00000009CDS4873202648732170-
GWHAAZE00000009CDS4873153948731753-
GWHAAZE00000009CDS4873107848731311-
Transcript Sequence

Network for GWHGAAZE030807

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.26zf-C3HC41311692.40E-08
PF02182.18SAD_SRA2624105.80E-53
PF13445.7zf-RING_UBOX5035573.20E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.465
SRR3591706second leaf0.000
SRR3591707mature leaf0.066
SRR3591708Shoot apex0.395
SRR3591709Stem0.000
SRR3591710White floral bud0.058
SRR3591711White flower0.114
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.060
SRP173429 SRR8316895Juvenile bud stage 0.060
SRR8316896Juvenile bud stage 0.203
SRR8316897Juvenile bud stage 0.114
SRR8316894Third green stage 0.090
SRR8316900Third green stage 0.262
SRR8316901Third green stage 0.089
SRR8316898Complete white stage 0.215
SRR8316899Complete white stage 0.150
SRR8316903Complete white stage 0.224
SRR8316902Silver flowering stage0.098
SRR8316904Silver flowering stage0.134
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.045
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.301
SRR6706287Light intensity 50%0.241
SRR6706288Light intensity 20%0.231
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.208
CNS0095593Slightly white alabastrum(diploid) 20.444
CNS0095594Slightly white alabastrum(diploid) 30.197
CNS0095595Whole white alabastrum(diploid) 20.059
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.118
CNS0095598Silvery flower (diploied) 10.130
CNS0095599Silvery flower (diploied) 20.609
CNS0095600Silvery flower (diploied) 30.084
CNS0095601Golden flower (diploid) 10.180
CNS0095602Golden flower (diploid) 20.179
CNS0095603Golden flower (diploid) 30.245
CNS0095604Slightly white alabastrum(tetraploid) 10.420
CNS0095605Slightly white alabastrum(tetraploid) 20.187
CNS0095606Slightly white alabastrum(tetraploid) 30.587
CNS0095607Whole white alabastrum(tetraploid) 10.035
CNS0095608Whole white alabastrum(tetraploid) 20.001
CNS0095609Whole white alabastrum(tetraploid) 30.131
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.147
CNS0095612Silvery flower (tetraploid) 30.032
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.748
CRR073298Stem 20.815
CRR073299Stem 30.586
CRR073300Leaf 10.178
CRR073301Leaf 20.375
CRR073302Leaf 30.338
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.001
CRR073305Juvenile bud 30.073
CRR073306Third green 10.000
CRR073307Third green 20.248
CRR073308Third green 30.140
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.001
CRR073315Gold flowering 10.331
CRR073316Gold flowering 20.334
CRR073317Gold flowering 30.424
CRR073318Tawny withering 10.599
CRR073319Tawny withering 20.370
CRR073320Tawny withering 30.158