Gene detail

Detail information of GWHGAAZE030808

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082927.1	0	PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Sesamum indicum]
COG	NP_247199.1	4E-136	glycyl-tRNA synthetase
Swissprot	tr\|O23627\|SYGM1_ARATH	0	Glycine--tRNA ligase 1, mitochondrial (Precursor)
trEMBL	tr\|K4BLW8\|K4BLW8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g118170.2.1}
TAIR10	AT1G29880.1	0	glycyl-tRNA synthetase / glycine--tRNA ligase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	48755683	48761362	+
GWHAAZE00000009	mRNA	48755683	48761362	+
GWHAAZE00000009	exon	48755683	48755768	+
GWHAAZE00000009	exon	48755858	48756029	+
GWHAAZE00000009	exon	48756856	48757238	+
GWHAAZE00000009	exon	48757418	48757535	+
GWHAAZE00000009	exon	48758110	48758304	+
GWHAAZE00000009	exon	48758422	48758646	+
GWHAAZE00000009	exon	48759463	48759522	+
GWHAAZE00000009	exon	48760271	48760351	+
GWHAAZE00000009	exon	48760484	48760889	+
GWHAAZE00000009	exon	48761145	48761362	+
GWHAAZE00000009	five_prime_UTR	48755683	48755768	+
GWHAAZE00000009	five_prime_UTR	48755858	48756029	+
GWHAAZE00000009	five_prime_UTR	48756856	48756876	+
GWHAAZE00000009	CDS	48756877	48757238	+
GWHAAZE00000009	CDS	48757418	48757535	+
GWHAAZE00000009	CDS	48758110	48758304	+
GWHAAZE00000009	CDS	48758422	48758646	+
GWHAAZE00000009	CDS	48759463	48759522	+
GWHAAZE00000009	CDS	48760271	48760351	+
GWHAAZE00000009	CDS	48760484	48760889	+
GWHAAZE00000009	CDS	48761145	48761362	+

Transcript Sequence
>GWHTAAZE030842 GCTACTAACGAAACTCCCCAACACACTCTACCCATCCAAATCGTCAGACATTGAAGTCTTCTGCTATTCCACTATCCACGCGCTCTGAATGGAGTCTGCACAGAACAGAGAAGCTTTCCGGCAAGCGGTAGTCAATACTCTCGAACGTCGTCTCTTCTACGTCCTTCCTTCAAGATCTACCGCGGTGTTGCGGGTCTTTATGATTATGGTCCTCCTGGCTGTGCCGTCAAGTCTAACGTCCTCGCTTTCTGGCGCCAGCATTTTGTTCTGGAAGAGAACATGTTGGAGGTTGATTGTCCTTGTGTGACACCGGAGGTTGTCCTAAAGGCATCTGGTCATGTTGATAAGTTCACAGACCTTATGGTTAAGGATGAGAAGACCGGTACTTGCTACCGTGCAGATCATTTGATCAAGGACTTTTGCAAAGAGAAGCTTGAGAAAGAAGCTAATATCTCTACTGAAAAAGCAGCAGAATTGAACCACGTACTTGCTGTGTTGGATGACCTTTCCCCTGAAGAACTAGGTGCAAAGATCAAGGAATATGGTATTACTGCTCCGGATACAAAGAACACTCTATCTGCACCCTATCCTTTCAATTTGATGTTTCAGACCTCAATTGGACCTTCTGGTGTGAGCCCTGGGTACATGCGACCCGAGACAGCACAAGGTATATTTGTGAACTTCAAGGACTTGTACTACTACAACGGGAACAAGCTTCCTTTTGCTGCTGCCCAGATTGGTCAAGCTTTCCGTAATGAGATATCTCCACGCCAAGGTCTCTTAAGAGTTCGTGAGTTTACTCTGGCTGAGATTGAACATTTTGTGGATCCTGATGACAAGTCGCACCCCAAATTTTCTGAAGTTGCGAAATTAGAATTTTTGATGTTCCCGAGGGAAGACCAGGTATCTGGTCGATCAGCAAGGAGAATAGCCATTGGTGAAGCTGTTTCTACGGGGATTGTCAACAATGAAACGCTAGGCTACTTCATAGGACGAGTGTATCTGTTCTTGACTCATCTCGGTATTGACAAAGATAAGTTACGGTTCCGGCAGCATTTAGCAAATGAGATGGCACACTATGCTGCAGACTGCTGGGATGCTGAGATCGAATGCTCTTATGGTTGGATTGAATGTGTTGGCATTGCTGATAGATCTGCATATGATTTGCAAGCTCACACGGAGAAAAGTGGTGTAGCCCTCGTGGCACATGAAAAATTTGCGGAGCCTAGAGAAGTGGAGAAACTTGTTATAACTCCAGTGAAGAAGGAGTTGGGCCTTGAATTCAAGGCTGAACAAAAGATGGTGGTTGAAGCATTGGAGGCTATGGGGGAAAAAGAAGCCATGGAAATGAAAGCCACTTTGGAGTCAAAGGGAGAGGCAGCGTTCCATGTTTGCACTCTTGGTAAAGATGTCTCTATAAAGAAGAGCATGGTGACAATCTCCAAGGAAAAGAAGAAGGAACATCAAAGGGTCTTCACCCCCTCAGTGATTGAACCGTCTTTTGGTATTGGAAGGATAATCTATTGCCTCTACGAACATTCTTTCTATACAAGAACTAGTAAAGACGGGGATGAACAACTGAACGTGTTCCGCTTCCCTCCGCTGGTAGCACCTATCAAGTGTACTGTATTCCCGTTGGTCCAGAATCAGCAATATGAGGAAGTTGCCAAACATATTGCCAAATCATTGACTGCTGTTGGGATCTCATATAAGATCGATATAACAGGTACGTCAATAGGGAAGCGATATGCAAGGACAGATGAACTCGGGGTTCCCCTTGCCATTACCGTGGATTCAGCGACCTCGGTGACAATCAGGGAGAGGGACAGCAAGCAGCAGATTCGTGTTAGTGTGGAAGAGGTGGCATCTGTAGTGAAGGAAGTGACCGATGGTCTGAGCACATGGGGTGATATGCTGTGGAAATACCCTACTCACTCATCTTGA

Network for GWHGAAZE030808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00587.26	tRNA-synt_2b	122	420	1.10E-10
PF03129.21	HGTP_anticodon	447	534	5.80E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01880	GARS, glyS1	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006426	biological_process	glycyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004820	molecular_function	glycine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	91.919
	SRR3591706	second leaf	86.444
	SRR3591707	mature leaf	100.494
	SRR3591708	Shoot apex	78.923
	SRR3591709	Stem	54.252
	SRR3591710	White floral bud	55.365
	SRR3591711	White flower	69.890
	SRR3591712	Green floral bud	81.340
	SRR3591713	Yellow flower	57.457
SRP173429	SRR8316895	Juvenile bud stage	57.887
	SRR8316896	Juvenile bud stage	89.435
	SRR8316897	Juvenile bud stage	40.069
	SRR8316894	Third green stage	29.673
	SRR8316900	Third green stage	90.292
	SRR8316901	Third green stage	73.684
	SRR8316898	Complete white stage	24.024
	SRR8316899	Complete white stage	88.570
	SRR8316903	Complete white stage	38.083
	SRR8316902	Silver flowering stage	20.471
	SRR8316904	Silver flowering stage	26.174
	SRR8316905	Silver flowering stage	13.400
	SRR8316906	Gold flowering stage	39.139
	SRR8316907	Gold flowering stage	43.700
	SRR8316908	Gold flowering stage	47.632
SRP132670	SRR6706286	Control	88.081
	SRR6706287	Light intensity 50%	90.712
	SRR6706288	Light intensity 20%	101.413
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.498
	CNS0095593	Slightly white alabastrum(diploid) 2	54.837
	CNS0095594	Slightly white alabastrum(diploid) 3	54.754
	CNS0095595	Whole white alabastrum(diploid) 2	45.398
	CNS0095596	Whole white alabastrum(diploid) 3	46.128
	CNS0095597	Whole white alabastrum(diploid) 4	39.922
	CNS0095598	Silvery flower (diploied) 1	49.450
	CNS0095599	Silvery flower (diploied) 2	48.947
	CNS0095600	Silvery flower (diploied) 3	64.714
	CNS0095601	Golden flower (diploid) 1	36.848
	CNS0095602	Golden flower (diploid) 2	63.641
	CNS0095603	Golden flower (diploid) 3	60.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	67.574
	CNS0095605	Slightly white alabastrum(tetraploid) 2	59.893
	CNS0095606	Slightly white alabastrum(tetraploid) 3	101.824
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.257
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.200
	CNS0095609	Whole white alabastrum(tetraploid) 3	90.525
	CNS0095610	Silvery flower (tetraploid) 1	67.292
	CNS0095611	Silvery flower (tetraploid) 2	76.373
	CNS0095612	Silvery flower (tetraploid) 3	50.773
	CNS0095613	Golden flower (tetraploid) 1	31.447
	CNS0095614	Golden flower (tetraploid) 2	55.467
	CNS0095615	Golden flower (tetraploid) 3	32.670
CRA001975	CRR073297	Stem 1	119.284
	CRR073298	Stem 2	112.623
	CRR073299	Stem 3	133.052
	CRR073300	Leaf 1	121.103
	CRR073301	Leaf 2	114.112
	CRR073302	Leaf 3	133.768
	CRR073303	Juvenile bud 1	147.614
	CRR073304	Juvenile bud 2	105.850
	CRR073305	Juvenile bud 3	152.418
	CRR073306	Third green 1	21.722
	CRR073307	Third green 2	20.967
	CRR073308	Third green 3	26.420
	CRR073309	Second white 1	36.126
	CRR073310	Second white 2	29.992
	CRR073311	Second white 3	25.694
	CRR073312	Silver flowering 1	17.882
	CRR073313	Silver flowering 2	26.235
	CRR073314	Silver flowering 3	18.020
	CRR073315	Gold flowering 1	172.755
	CRR073316	Gold flowering 2	234.502
	CRR073317	Gold flowering 3	188.854
	CRR073318	Tawny withering 1	109.543
	CRR073319	Tawny withering 2	98.855
	CRR073320	Tawny withering 3	118.614