Gene detail

Detail information of GWHGAAZE030837

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009802290.1	1.07575E-76	PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Nicotiana sylvestris]
COG	YP_003266417.1	5E-14	serine/threonine protein kinase
Swissprot	tr\|Q9CAD5\|YODA_ARATH	2E-23	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|M1CRS3\|M1CRS3_SOLTU	9E-75	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400073304}
TAIR10	AT5G67080.1	2E-35	mitogen-activated protein kinase kinase kinase 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49167364	49168218	+
GWHAAZE00000009	mRNA	49167364	49168218	+
GWHAAZE00000009	exon	49167364	49167514	+
GWHAAZE00000009	exon	49167560	49168218	+
GWHAAZE00000009	CDS	49167364	49167514	+
GWHAAZE00000009	CDS	49167560	49168218	+

Transcript Sequence
>GWHTAAZE030871 ATACGAGGGCTAAATCATATTCATGCTTGCGGTTATGTTCACTGTGATTTAAAGCCTCAAAATATATTACTTGTGCCTTCTTATAACAAGAGTGGTGGTGTTGGTACTGAATTTCGGGCAAAGATTGCTGATTTAGGGTTGGCCAAGAGGGGTACTCCTATGTATATGTCACCTGAAGCAGTGGTTGACAGGGTACAAAAGCCTCCTTCTGATATTTGGGCCCTTGGTTGTATTGTGCTTGAGATGTTAACCGGGAAATCTCCGTGGGAGTGTAAACAAGATTTGAGTGCTAAGGAGTTTCTGTGCCAGATTAGTGAAGGGAATGAATTACCTAACATCCATGATAAGATATCAAAAGAGGGGAAGAGTTTTCTGAAGGGTTGCTTTGTGAGAAAGCTAAAGTGTAGATTCACAGCTGAGATACTATTGAGTCACCCATTTGTAGAAGGGCTAGTTGACAATGATGACGATGAGGTTGAAGAATCCAAGGAGGTTTTGGATATAAGTGCTGTTCATTCTGTAGTTTTCTCTGATAATGACGACGAGCTTTGTTGTTCCTCTTTTTTGGAGGATTGGTCTGATTGGAGCTTTCTATCCAAAGAAGAGTCCTTTTCTTTTTGTTCAGAAGAAGAGAAGAGGGAGAATCAAGTGGTTTCTAGTTCTGCTCAAGATGAAGTATTGCAAGTCCAAGAGAGTAATGTTACAAGCTCCAATATTCGTGCCAGTCTTGAGCATGTTATGAAACCGTTGATGAAGGTTTCACCACAGGTTCCCACAATTATGCCACAGCACCGTGGTGAGACATTTTGA

Network for GWHGAAZE030837

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	2	148	1.60E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.535
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.772
	SRR3591708	Shoot apex	0.164
	SRR3591709	Stem	1.075
	SRR3591710	White floral bud	0.491
	SRR3591711	White flower	1.475
	SRR3591712	Green floral bud	1.066
	SRR3591713	Yellow flower	2.436
SRP173429	SRR8316895	Juvenile bud stage	3.263
	SRR8316896	Juvenile bud stage	3.075
	SRR8316897	Juvenile bud stage	0.941
	SRR8316894	Third green stage	1.347
	SRR8316900	Third green stage	2.495
	SRR8316901	Third green stage	2.401
	SRR8316898	Complete white stage	0.506
	SRR8316899	Complete white stage	4.214
	SRR8316903	Complete white stage	0.953
	SRR8316902	Silver flowering stage	0.794
	SRR8316904	Silver flowering stage	1.350
	SRR8316905	Silver flowering stage	0.778
	SRR8316906	Gold flowering stage	1.223
	SRR8316907	Gold flowering stage	2.181
	SRR8316908	Gold flowering stage	1.573
SRP132670	SRR6706286	Control	0.483
	SRR6706287	Light intensity 50%	0.515
	SRR6706288	Light intensity 20%	0.368
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.160
	CNS0095593	Slightly white alabastrum(diploid) 2	6.898
	CNS0095594	Slightly white alabastrum(diploid) 3	3.342
	CNS0095595	Whole white alabastrum(diploid) 2	3.276
	CNS0095596	Whole white alabastrum(diploid) 3	1.868
	CNS0095597	Whole white alabastrum(diploid) 4	2.448
	CNS0095598	Silvery flower (diploied) 1	6.501
	CNS0095599	Silvery flower (diploied) 2	5.898
	CNS0095600	Silvery flower (diploied) 3	2.382
	CNS0095601	Golden flower (diploid) 1	8.169
	CNS0095602	Golden flower (diploid) 2	5.962
	CNS0095603	Golden flower (diploid) 3	4.917
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.302
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.548
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.561
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.175
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.409
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.501
	CNS0095610	Silvery flower (tetraploid) 1	2.257
	CNS0095611	Silvery flower (tetraploid) 2	1.194
	CNS0095612	Silvery flower (tetraploid) 3	0.960
	CNS0095613	Golden flower (tetraploid) 1	1.405
	CNS0095614	Golden flower (tetraploid) 2	1.808
	CNS0095615	Golden flower (tetraploid) 3	0.775
CRA001975	CRR073297	Stem 1	1.272
	CRR073298	Stem 2	1.056
	CRR073299	Stem 3	1.004
	CRR073300	Leaf 1	0.655
	CRR073301	Leaf 2	0.996
	CRR073302	Leaf 3	0.930
	CRR073303	Juvenile bud 1	0.937
	CRR073304	Juvenile bud 2	0.311
	CRR073305	Juvenile bud 3	0.665
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.234
	CRR073308	Third green 3	0.270
	CRR073309	Second white 1	0.322
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.062
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.102
	CRR073315	Gold flowering 1	0.443
	CRR073316	Gold flowering 2	1.257
	CRR073317	Gold flowering 3	0.156
	CRR073318	Tawny withering 1	1.097
	CRR073319	Tawny withering 2	2.876
	CRR073320	Tawny withering 3	0.729