Gene detail

Detail information of GWHGAAZE030852

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009758397.1	0	PREDICTED: cinnamoyl-CoA reductase 1-like [Nicotiana sylvestris]
COG	YP_002015379.1	2E-56	NAD-dependent epimerase/dehydratase
Swissprot	tr\|Q9S9N9\|CCR1_ARATH	4E-174	Cinnamoyl-CoA reductase 1
trEMBL	tr\|M1BR81\|M1BR81_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400051049}
TAIR10	AT1G15950.1	4E-139	cinnamoyl coa reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49390297	49392178	-
GWHAAZE00000009	mRNA	49390297	49392178	-
GWHAAZE00000009	exon	49390297	49390456	-
GWHAAZE00000009	exon	49390547	49390899	-
GWHAAZE00000009	exon	49391073	49391258	-
GWHAAZE00000009	exon	49391696	49391850	-
GWHAAZE00000009	exon	49392058	49392178	-
GWHAAZE00000009	CDS	49392058	49392178	-
GWHAAZE00000009	CDS	49391696	49391850	-
GWHAAZE00000009	CDS	49391073	49391258	-
GWHAAZE00000009	CDS	49390547	49390899	-
GWHAAZE00000009	CDS	49390297	49390456	-

Transcript Sequence
>GWHTAAZE030886 ATGCCGTCAGTTTCAGGCCAAGTGGTGTGTGTGACTGGTGCCGGAGGATTCATCGCTTCATGGTTAGTTAAACTACTCTTAGAAAAGGGCTACACCGTTCGAGGAACTGTCAGAAATCCAGATGATTCGAAGAATGGTCATTTGAGAGAGATGGAAGGAGCAAAAGAGAGATTAATTCTATGCAAAGCTGATCTTCTTGATTATCAGAGTTTGCTAGAAGCCATTAGTGGATGTCATGGTGTTTTCCATACTGCATCCCCAGTGACTGAAGATCCTGAAAAAATGGTAGAGCCGGCTGTGAATGGGACAAAGAATGTGATAGTAGCAGCAGCGGAAGCAAAAGTCCAGAGAGTGGTATTCACTTCCTCAATTGGGACAGTGTACATGAACCCTAACAGGAGCCCCAATACCATGGTTGATGAAAGTTGTTGGAGCGACCTTGATTTCTGCAAGAACACTAAGAACTGGTACTGCTACGGGAAGACAGTAGCAGAGCAATCGGCTTGGGAAGAGGCAAAGAAGAAAGGAGTGGACCTAGTTGTAATCAACCCAATGCTGGTGGTTGGACCACTTTTGCAATCCACTGTGAATGCCAGCACTATTCATATACTAAAGTACCTCAATGGCTCTGTTAAAACTTATGCTAACTCGGTCCAGGGTTACGTCCACGTTAGGGATGTGGCATTGGCTCACATTATCCTCTTTGAGACTCGCTTGGCCTCTGGACGGTACATTTGTGCTGAGAGTATGCTTCATCGTGGTCAAGTAGTCGAAATTCTTGCCAAGTTTTTTCCAGAGTATGCGATACCCACCAAGTGTTCTGATGAAATTAAGCCAAGGGCAAAAGCCTATAAGTTCTCAAACCAAAGGCTGAAGGATTTAGGTTTGGAGTTCACACCTGTGAAGCAATGCTTATACGACACCGTCAAGAGTTTGCAAGATAAGGGTCACCTCGCGCTCCCTAACCAGAAATGA

Network for GWHGAAZE030852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01370.22	Epimerase	9	237	5.80E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09753	CCR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0050662	molecular_function	coenzyme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.343
	SRR3591706	second leaf	0.114
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.099
	SRR3591709	Stem	0.083
	SRR3591710	White floral bud	0.026
	SRR3591711	White flower	2.124
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	1.266
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.071
	SRR8316904	Silver flowering stage	0.192
	SRR8316905	Silver flowering stage	0.015
	SRR8316906	Gold flowering stage	0.083
	SRR8316907	Gold flowering stage	0.755
	SRR8316908	Gold flowering stage	1.710
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.235
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.004
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.220
	CNS0095603	Golden flower (diploid) 3	0.175
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.111
	CNS0095611	Silvery flower (tetraploid) 2	0.067
	CNS0095612	Silvery flower (tetraploid) 3	0.137
	CNS0095613	Golden flower (tetraploid) 1	0.200
	CNS0095614	Golden flower (tetraploid) 2	0.041
	CNS0095615	Golden flower (tetraploid) 3	0.128
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	1.060
	CRR073307	Third green 2	0.315
	CRR073308	Third green 3	0.216
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.312
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.215
	CRR073314	Silver flowering 3	0.267
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.087
	CRR073318	Tawny withering 1	0.048
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000