Detail information of GWHGAAZE030857


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010655009.13.89922E-47PREDICTED: 40S ribosomal protein S12 [Vitis vinifera]
Swissprottr|Q9XHS0|RS12_HORVU6E-4240S ribosomal protein S12
trEMBLtr|I1KVK9|I1KVK9_SOYBN1E-4740S ribosomal protein S12 {ECO:0000256|RuleBase:RU000670}
TAIR10AT2G32060.34E-32Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4947999149480266-
GWHAAZE00000009mRNA4947999149480266-
GWHAAZE00000009exon4947999149480266-
GWHAAZE00000009CDS4947999149480266-
Transcript Sequence

Network for GWHGAAZE030857

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01248.27Ribosomal_L7Ae6815.60E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02951RP-S12e, RPS12 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf243.188
SRR3591706second leaf121.843
SRR3591707mature leaf41.991
SRR3591708Shoot apex263.986
SRR3591709Stem91.426
SRR3591710White floral bud109.344
SRR3591711White flower106.676
SRR3591712Green floral bud223.988
SRR3591713Yellow flower65.869
SRP173429 SRR8316895Juvenile bud stage 114.491
SRR8316896Juvenile bud stage 179.711
SRR8316897Juvenile bud stage 109.504
SRR8316894Third green stage 85.045
SRR8316900Third green stage 310.637
SRR8316901Third green stage 265.599
SRR8316898Complete white stage 60.704
SRR8316899Complete white stage 171.702
SRR8316903Complete white stage 93.828
SRR8316902Silver flowering stage44.085
SRR8316904Silver flowering stage49.710
SRR8316905Silver flowering stage23.776
SRR8316906Gold flowering stage 85.532
SRR8316907Gold flowering stage 97.307
SRR8316908Gold flowering stage 101.459
SRP132670SRR6706286Control449.828
SRR6706287Light intensity 50%434.041
SRR6706288Light intensity 20%464.045
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1171.375
CNS0095593Slightly white alabastrum(diploid) 2201.296
CNS0095594Slightly white alabastrum(diploid) 3149.883
CNS0095595Whole white alabastrum(diploid) 2163.288
CNS0095596Whole white alabastrum(diploid) 3217.831
CNS0095597Whole white alabastrum(diploid) 4127.798
CNS0095598Silvery flower (diploied) 154.567
CNS0095599Silvery flower (diploied) 264.677
CNS0095600Silvery flower (diploied) 378.648
CNS0095601Golden flower (diploid) 149.750
CNS0095602Golden flower (diploid) 254.507
CNS0095603Golden flower (diploid) 358.410
CNS0095604Slightly white alabastrum(tetraploid) 1193.731
CNS0095605Slightly white alabastrum(tetraploid) 2188.475
CNS0095606Slightly white alabastrum(tetraploid) 3241.195
CNS0095607Whole white alabastrum(tetraploid) 1103.835
CNS0095608Whole white alabastrum(tetraploid) 2102.140
CNS0095609Whole white alabastrum(tetraploid) 3231.284
CNS0095610Silvery flower (tetraploid) 1102.740
CNS0095611Silvery flower (tetraploid) 259.987
CNS0095612Silvery flower (tetraploid) 381.920
CNS0095613Golden flower (tetraploid) 141.198
CNS0095614Golden flower (tetraploid) 267.719
CNS0095615Golden flower (tetraploid) 333.482
CRA001975CRR073297Stem 1264.417
CRR073298Stem 2268.000
CRR073299Stem 3287.864
CRR073300Leaf 1291.062
CRR073301Leaf 2331.197
CRR073302Leaf 3467.981
CRR073303Juvenile bud 1335.683
CRR073304Juvenile bud 2278.146
CRR073305Juvenile bud 3208.163
CRR073306Third green 1130.923
CRR073307Third green 2131.810
CRR073308Third green 3111.331
CRR073309Second white 177.241
CRR073310Second white 270.356
CRR073311Second white 342.138
CRR073312Silver flowering 157.827
CRR073313Silver flowering 271.269
CRR073314Silver flowering 350.643
CRR073315Gold flowering 191.992
CRR073316Gold flowering 2100.260
CRR073317Gold flowering 387.398
CRR073318Tawny withering 1220.416
CRR073319Tawny withering 2170.185
CRR073320Tawny withering 3230.934