Detail information of GWHGAAZE030882


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98177.12.02183E-28unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TQB7|A0A068TQB7_COFCA8E-29Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO98177.1}
TAIR10AT1G15290.13E-20Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4980331549804227-
GWHAAZE00000009mRNA4980331549804227-
GWHAAZE00000009exon4980410349804227-
GWHAAZE00000009exon4980393749804041-
GWHAAZE00000009exon4980331549803612-
GWHAAZE00000009CDS4980410349804227-
GWHAAZE00000009CDS4980393749804041-
GWHAAZE00000009CDS4980331549803612-
Transcript Sequence

Network for GWHGAAZE030882

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0040


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.208
SRR3591706second leaf0.237
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.242
SRR3591709Stem1.022
SRR3591710White floral bud0.708
SRR3591711White flower0.125
SRR3591712Green floral bud1.408
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.025
SRR8316896Juvenile bud stage 2.250
SRR8316897Juvenile bud stage 0.591
SRR8316894Third green stage 1.508
SRR8316900Third green stage 3.711
SRR8316901Third green stage 2.959
SRR8316898Complete white stage 0.787
SRR8316899Complete white stage 2.740
SRR8316903Complete white stage 2.301
SRR8316902Silver flowering stage0.933
SRR8316904Silver flowering stage1.667
SRR8316905Silver flowering stage0.514
SRR8316906Gold flowering stage 0.886
SRR8316907Gold flowering stage 0.710
SRR8316908Gold flowering stage 0.614
SRP132670SRR6706286Control5.043
SRR6706287Light intensity 50%5.105
SRR6706288Light intensity 20%5.402
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.215
CNS0095593Slightly white alabastrum(diploid) 22.744
CNS0095594Slightly white alabastrum(diploid) 30.304
CNS0095595Whole white alabastrum(diploid) 21.238
CNS0095596Whole white alabastrum(diploid) 31.616
CNS0095597Whole white alabastrum(diploid) 40.925
CNS0095598Silvery flower (diploied) 12.195
CNS0095599Silvery flower (diploied) 20.751
CNS0095600Silvery flower (diploied) 31.501
CNS0095601Golden flower (diploid) 10.942
CNS0095602Golden flower (diploid) 21.338
CNS0095603Golden flower (diploid) 30.840
CNS0095604Slightly white alabastrum(tetraploid) 10.175
CNS0095605Slightly white alabastrum(tetraploid) 20.468
CNS0095606Slightly white alabastrum(tetraploid) 30.789
CNS0095607Whole white alabastrum(tetraploid) 10.111
CNS0095608Whole white alabastrum(tetraploid) 20.094
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.103
CNS0095612Silvery flower (tetraploid) 30.089
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.051
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 14.256
CRR073298Stem 24.282
CRR073299Stem 30.191
CRR073300Leaf 15.247
CRR073301Leaf 24.772
CRR073302Leaf 30.869
CRR073303Juvenile bud 10.859
CRR073304Juvenile bud 20.395
CRR073305Juvenile bud 31.451
CRR073306Third green 10.032
CRR073307Third green 20.000
CRR073308Third green 30.275
CRR073309Second white 10.000
CRR073310Second white 20.056
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 21.191
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.526
CRR073319Tawny withering 20.303
CRR073320Tawny withering 30.353