Gene detail

Detail information of GWHGAAZE030884

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654817.1	0	PREDICTED: protein FAR1-RELATED SEQUENCE 8 isoform X4 [Vitis vinifera]
Swissprot	tr\|Q9S793\|FRS8_ARATH	0	Protein FAR1-RELATED SEQUENCE 8
trEMBL	tr\|A5AL33\|A5AL33_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78024.1}
TAIR10	AT1G80010.1	1E-174	FAR1-related sequence 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49826608	49830587	+
GWHAAZE00000009	mRNA	49826608	49830587	+
GWHAAZE00000009	exon	49826608	49827490	+
GWHAAZE00000009	exon	49827612	49828831	+
GWHAAZE00000009	exon	49830444	49830587	+
GWHAAZE00000009	CDS	49826608	49827490	+
GWHAAZE00000009	CDS	49827612	49828831	+
GWHAAZE00000009	CDS	49830444	49830587	+

Transcript Sequence
>GWHTAAZE030918 ATGAAGGTTCTGAAAACAGTGAGCAGCTGCTTCAGGATGAGGGCAGTGATCGCCAGCGTTGAGGGTAAACAAGTCTTTGCTATTGAAATTAATGACCTTAAGAATAATGGCGAACAAGTTCGTGGGGTTGAAAGTAATGACCTTGACAACAGCAATGAGCAAGTGCTTGGGATTGACAGTAATGACCTTGAGAATGACAGCGAGCAGTTGCTTGAGTTTGAAAGCAACGACCTTGATGACAATGAGCAAGTGCTTGAGTTTGAAAGTAATGACAGTTACCAAATGATTGAGATTGATAACAATGACCATGAGATTGGGAGAGACGGTGATACAACAATAGTTGATGATCAAAGCGGCATATCTCTTGGGAAGGGCTATCCACCGCCAGTTGTAGGGATGGAATTTGAGTCATATGATGATGCTTATAATTATTATAATTGCTATGCCAAAGAACTGGGATTTGCCATCAGGGTTAAATCTTCATGGACCAAACGTAACAGCAAAGAGAAGCGTGGTGCAGTGCTCTGTTGCAATTGTGAGGGTTTTAAAACATTGAAAGAAGCAAGCAGTAGGAGGAAGGAAACAAGAACAGGTTGTCTAGCAATGATAAGGTTGAGGTTAGTGGAATCCAACAGATGGAGGGTGGATGAAGCTAAGCTCGAACACAACCACTTATTTGATCCTGAAAGGGCACAAAACTCCAAGTCGCACAGGAAGATGGACAGTGGAGTCAAAAGGAAGTTGGAGCCGACAGTTGGTGTTGAAGTGCGAACGATCAAGTTGTATAGAACTCCTGCTGCAGATGCAGTGGGTTATGGAAGCTCAAATGAAAGAGAAATCAGTAACCATGTTGATCAGTCCAAGCACTTGAATCTTAAAAAAGGGCAAGGGCGGCATTATGGGTATTTTTGTGATGTCGTTGCAGTTGATACAACATATTTGTCATGCAAATATGAGATTCCTCTTGTGGCATTTGTCGGATCAAATCACCATGGCCAGTCAGTTTTGCTGGGTTGCAGTTTGCTTGCTGATGAATCTGTGGAGACTTTTATATGGTTATTAAGGGCATGGTTAACATGTATGTCGGGCCACCCTCCACAAGCTATCATTACAGACCATTGCAAGACCTTGCAGGGTGCAATTGCAGAGGTTTTCCCCAGGGCCCACCATCGTCTCTCTTTGCCCTCTGTGATGCAAATCATTCTTGAGAAGTTGGGTGAACTTGGGGAGTCTGAAGTATTTCAAACAGTACTGAATAAAACAGTTTGTGACTCGTTAAAAGCCGATGAATTCGAGATTGCTTGGGAGAATTTGGTCCAGAAGTTCGGAATTAGGGAACACGATTGGCTTGGGAATTTGTATAAAGACCGAGAGCGATGGGCCCCGGTTTACTTGAAAGACACATTCTTTGCTGGCATGTCCGCTTCTCAACCACGTGAATCTATCAGTCCTTTCTTTGGTGGGTATGTGCATAGACAAACTTCATTGAAAGAATTTTTTGATATCTACGAATTAGTTTTACAAAAAAAGAATCAAAAGGAAGCTCTCGATGATTTCCACTCACGAGAGTATAGCCCTATGCTAAAAACAAGCTACAAGTACGAATTACAGCTCTCTGAAGTTTATACAAAAGAAATATTCTCAAAGTTCCAGTACGAGGTGGAGATGATGTCTAATTGCATTAGTGTAACACAAATTCATGCTAGTGGGGTCATCATTACATACATGGTCAAAGAACTGGAGGCCGAGGTAAATATGAGGGGTTCAAAAAGCTACGAAGTTATGTACGATAAAGTAGGAGCAGAAGTTCGTTGCATTTGCAGCTGCTTTAATTTCAAAGGCTATCTATGCAGACATGCTTTATCTGTTCTGAACTACAATGGGATAGAGGAAATCCCAAGTCAGTATATTTTGTCGCGGTGGAGGAAGGATTTTAAGCGATTGTACGTGCCTGATCTTGGCTCTAATAATGTTGACGTTAGCAATCCGGTTCAATGGTTTGATCACTTGTATAAACGAGCATTGCAAGTCGTCGAAGAAGGGATGAACTCTCAAGAACATTATATGGTTGCTTGGCAAGCGTTTAAAGAGTCATTGAACAAGTCGCGGAGGTGGGAAAGGGTTTTTATCGGTCATCAATGGCTGTCATTCAACGCGGAGATGAGCGATGGGAGAGCTACAAAGGTGAGAGCTGACGTTGGAGACAAGCGAGAGAAGCTGAGAGACAAGCGGGTGGAAGACGAGTGA

Network for GWHGAAZE030884

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.16	FAR1	143	226	4.20E-23
PF10551.10	MULE	306	393	2.80E-24
PF04434.18	SWIM	601	626	3.60E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.203
	SRR3591706	second leaf	4.188
	SRR3591707	mature leaf	3.920
	SRR3591708	Shoot apex	5.139
	SRR3591709	Stem	6.057
	SRR3591710	White floral bud	6.124
	SRR3591711	White flower	7.563
	SRR3591712	Green floral bud	7.405
	SRR3591713	Yellow flower	8.399
SRP173429	SRR8316895	Juvenile bud stage	3.266
	SRR8316896	Juvenile bud stage	5.864
	SRR8316897	Juvenile bud stage	1.844
	SRR8316894	Third green stage	2.441
	SRR8316900	Third green stage	6.020
	SRR8316901	Third green stage	6.217
	SRR8316898	Complete white stage	2.928
	SRR8316899	Complete white stage	7.284
	SRR8316903	Complete white stage	4.812
	SRR8316902	Silver flowering stage	3.289
	SRR8316904	Silver flowering stage	4.653
	SRR8316905	Silver flowering stage	2.050
	SRR8316906	Gold flowering stage	7.447
	SRR8316907	Gold flowering stage	6.725
	SRR8316908	Gold flowering stage	7.197
SRP132670	SRR6706286	Control	3.893
	SRR6706287	Light intensity 50%	4.485
	SRR6706288	Light intensity 20%	3.822
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.453
	CNS0095593	Slightly white alabastrum(diploid) 2	5.910
	CNS0095594	Slightly white alabastrum(diploid) 3	5.077
	CNS0095595	Whole white alabastrum(diploid) 2	4.323
	CNS0095596	Whole white alabastrum(diploid) 3	5.099
	CNS0095597	Whole white alabastrum(diploid) 4	4.979
	CNS0095598	Silvery flower (diploied) 1	4.593
	CNS0095599	Silvery flower (diploied) 2	3.174
	CNS0095600	Silvery flower (diploied) 3	7.356
	CNS0095601	Golden flower (diploid) 1	5.158
	CNS0095602	Golden flower (diploid) 2	8.543
	CNS0095603	Golden flower (diploid) 3	8.289
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.226
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.564
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.071
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.665
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.912
	CNS0095610	Silvery flower (tetraploid) 1	8.976
	CNS0095611	Silvery flower (tetraploid) 2	9.164
	CNS0095612	Silvery flower (tetraploid) 3	7.882
	CNS0095613	Golden flower (tetraploid) 1	7.624
	CNS0095614	Golden flower (tetraploid) 2	8.131
	CNS0095615	Golden flower (tetraploid) 3	10.132
CRA001975	CRR073297	Stem 1	5.559
	CRR073298	Stem 2	4.858
	CRR073299	Stem 3	5.311
	CRR073300	Leaf 1	5.584
	CRR073301	Leaf 2	5.402
	CRR073302	Leaf 3	3.152
	CRR073303	Juvenile bud 1	3.989
	CRR073304	Juvenile bud 2	3.594
	CRR073305	Juvenile bud 3	3.227
	CRR073306	Third green 1	2.150
	CRR073307	Third green 2	1.452
	CRR073308	Third green 3	1.848
	CRR073309	Second white 1	1.869
	CRR073310	Second white 2	2.378
	CRR073311	Second white 3	2.356
	CRR073312	Silver flowering 1	1.406
	CRR073313	Silver flowering 2	1.784
	CRR073314	Silver flowering 3	1.630
	CRR073315	Gold flowering 1	3.432
	CRR073316	Gold flowering 2	3.617
	CRR073317	Gold flowering 3	1.446
	CRR073318	Tawny withering 1	3.743
	CRR073319	Tawny withering 2	3.678
	CRR073320	Tawny withering 3	3.799