Detail information of GWHGAAZE030887


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP37062.10hypothetical protein JCGZ_06118 [Jatropha curcas]
COGYP_183899.12E-114signal recognition particle protein Srp54
Swissprottr|P49972|SR542_SOLLC0Signal recognition particle 54 kDa protein 2
trEMBLtr|A0A067KLN9|A0A067KLN9_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP37062.1}
TAIR10AT1G48900.10Signal recognition particle, SRP54 subunit protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene4984957549855503-
GWHAAZE00000009mRNA4984957549855503-
GWHAAZE00000009exon4984957549849906-
GWHAAZE00000009exon4985003749850115-
GWHAAZE00000009exon4985083149850988-
GWHAAZE00000009exon4985111449851214-
GWHAAZE00000009exon4985219749852345-
GWHAAZE00000009exon4985242749852577-
GWHAAZE00000009exon4985379849853951-
GWHAAZE00000009exon4985424249854332-
GWHAAZE00000009exon4985527349855503-
GWHAAZE00000009CDS4985527349855503-
GWHAAZE00000009CDS4985424249854332-
GWHAAZE00000009CDS4985379849853951-
GWHAAZE00000009CDS4985242749852577-
GWHAAZE00000009CDS4985219749852345-
GWHAAZE00000009CDS4985111449851214-
GWHAAZE00000009CDS4985083149850988-
GWHAAZE00000009CDS4985003749850115-
GWHAAZE00000009CDS4984957549849906-
Transcript Sequence

Network for GWHGAAZE030887

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02881.20SRP54_N6833.10E-14
PF00448.23SRP541042936.60E-73
PF02978.20SRP_SPB3254134.80E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03106SRP54, ffh Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0006614biological_processSRP-dependent cotranslational protein targeting to membrane
GO:0048500cellular_componentsignal recognition particle
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity
GO:0008312molecular_function7S RNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf69.364
SRR3591706second leaf33.408
SRR3591707mature leaf47.204
SRR3591708Shoot apex63.892
SRR3591709Stem78.370
SRR3591710White floral bud85.621
SRR3591711White flower89.141
SRR3591712Green floral bud87.854
SRR3591713Yellow flower76.231
SRP173429 SRR8316895Juvenile bud stage 51.988
SRR8316896Juvenile bud stage 72.308
SRR8316897Juvenile bud stage 36.952
SRR8316894Third green stage 32.092
SRR8316900Third green stage 78.906
SRR8316901Third green stage 74.203
SRR8316898Complete white stage 36.948
SRR8316899Complete white stage 102.353
SRR8316903Complete white stage 56.855
SRR8316902Silver flowering stage34.737
SRR8316904Silver flowering stage49.656
SRR8316905Silver flowering stage22.190
SRR8316906Gold flowering stage 76.489
SRR8316907Gold flowering stage 70.724
SRR8316908Gold flowering stage 74.908
SRP132670SRR6706286Control107.223
SRR6706287Light intensity 50%113.939
SRR6706288Light intensity 20%111.750
CNP0000432CNS0095592Slightly white alabastrum(diploid) 165.565
CNS0095593Slightly white alabastrum(diploid) 258.431
CNS0095594Slightly white alabastrum(diploid) 369.158
CNS0095595Whole white alabastrum(diploid) 266.533
CNS0095596Whole white alabastrum(diploid) 363.504
CNS0095597Whole white alabastrum(diploid) 461.609
CNS0095598Silvery flower (diploied) 180.908
CNS0095599Silvery flower (diploied) 269.024
CNS0095600Silvery flower (diploied) 388.471
CNS0095601Golden flower (diploid) 171.646
CNS0095602Golden flower (diploid) 291.328
CNS0095603Golden flower (diploid) 394.202
CNS0095604Slightly white alabastrum(tetraploid) 164.153
CNS0095605Slightly white alabastrum(tetraploid) 257.673
CNS0095606Slightly white alabastrum(tetraploid) 379.823
CNS0095607Whole white alabastrum(tetraploid) 154.940
CNS0095608Whole white alabastrum(tetraploid) 250.038
CNS0095609Whole white alabastrum(tetraploid) 374.936
CNS0095610Silvery flower (tetraploid) 177.808
CNS0095611Silvery flower (tetraploid) 286.668
CNS0095612Silvery flower (tetraploid) 364.191
CNS0095613Golden flower (tetraploid) 153.866
CNS0095614Golden flower (tetraploid) 280.229
CNS0095615Golden flower (tetraploid) 369.390
CRA001975CRR073297Stem 196.974
CRR073298Stem 288.491
CRR073299Stem 389.373
CRR073300Leaf 195.436
CRR073301Leaf 290.412
CRR073302Leaf 392.503
CRR073303Juvenile bud 191.467
CRR073304Juvenile bud 270.484
CRR073305Juvenile bud 396.174
CRR073306Third green 156.276
CRR073307Third green 246.893
CRR073308Third green 354.631
CRR073309Second white 150.788
CRR073310Second white 251.908
CRR073311Second white 349.214
CRR073312Silver flowering 152.859
CRR073313Silver flowering 257.818
CRR073314Silver flowering 345.608
CRR073315Gold flowering 153.087
CRR073316Gold flowering 278.159
CRR073317Gold flowering 364.341
CRR073318Tawny withering 176.117
CRR073319Tawny withering 267.638
CRR073320Tawny withering 374.157