Gene detail

Detail information of GWHGAAZE030891

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004303295.1	0	PREDICTED: PTI1-like tyrosine-protein kinase At3g15890-like [Fragaria vesca subsp. vesca]
COG	YP_004335154.1	1E-23	serine/threonine protein kinase
Swissprot	tr\|Q9LSC2\|Y3589_ARATH	2E-162	PTI1-like tyrosine-protein kinase At3g15890
trEMBL	tr\|M5XCG3\|M5XCG3_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16780.1}
TAIR10	AT1G52540.1	1E-129	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	49944508	49947316	-
GWHAAZE00000009	mRNA	49944508	49947316	-
GWHAAZE00000009	exon	49944508	49945177	-
GWHAAZE00000009	exon	49945620	49945882	-
GWHAAZE00000009	exon	49946642	49946789	-
GWHAAZE00000009	exon	49947270	49947316	-
GWHAAZE00000009	CDS	49947270	49947316	-
GWHAAZE00000009	CDS	49946642	49946789	-
GWHAAZE00000009	CDS	49945620	49945882	-
GWHAAZE00000009	CDS	49944508	49945177	-

Transcript Sequence
>GWHTAAZE030925 ATGGACTTTCGCTCCATGTTTTGTTGCCGAGGAAAGGCTTTTCATCGGAAAGGGCAGGGAAAAAAACGGTCTACATGGAGGATTTTTTCGTTGAAGGAGCTTCATGCGGCTACTAATAACTTCAATTACGACAACAAGCTTGGAGAAGGCGGATTTGGTAGTGTTTATTGGGGCCAGCTATGGGATGGATCTCAAATAGCAGTTAAAAGGTTGAAGGTTTGGAGCAACAAAGCAGAGATGGAATTTGCTGTTGAGGTCGAGGTACTGGCACGAGTACGGCACAAGAATCTGCTGAGTTTGCGCGGCTATTGTGCTGAAGGGCAGGAACGTCTAATTGTATATGATTACATGCCCAATCTGAGCTTGCTATCTCATCTTCATGGCCAACACTCAACTGAGTGCCTTCTTGATTGGAACCGAAGAATGAATATTGCAATTGGTTCTGCCGAGGGAATTGTCTATCTTCACCATCATGCAACCCCACATATAATCCACAGAGACATCAAAGCGAGCAATGTTTTGCTTGATTCAGATTTCCAAGCTCAGGTTGCTGATTTTGGGTTTGCAAAGCTAATACCAGATGGTGCAACCCATGTAACCACTAGGGTTAAGGGCACCCTCGGCTACCTTGCCCCAGAATATGCAATGTTGGGGAAGGCGTCCGAGAGCTGTGATGTTTACAGCTTTGGCATTCTATTGCTTGAGCTCGCTAGTGGCAAGAAACCCATTGAGAAGCTCAGTGCAACAATGAAGCGTACTATCACTGATTGGGCACTCCCATTGGCATGTCAAAAAAAGTTTGATGAACTTGCAGACCCGAGGCTGAACGGGAAGTATGTGGAAGAAGAGTTGAAGAGGATAGTGTTTGTTGCACTCCTATGTGCTCATAGCCAGCCAGAGAAGAGACCCACCATGCTTGAGGTGGTAGATCTACTGCAGGGAGAATCCAAAGAAAAGTTTGCTGGTTTAGAAAATAATGAATTGTTCACGAGTTCTCAGAGGGGGGATTATAATGATGGACTATCAGGTGCGGAAGATAGCTCGGATTTCATTTCCGAGGAAAAAGAGCCAATACAAGAAATTGAAAAGGGCGGTGTAGCACCAGAAATTCACAGCTCTATTAACTAG

Network for GWHGAAZE030891

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	42	309	6.90E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.811
	SRR3591706	second leaf	32.034
	SRR3591707	mature leaf	41.550
	SRR3591708	Shoot apex	34.085
	SRR3591709	Stem	51.491
	SRR3591710	White floral bud	37.303
	SRR3591711	White flower	43.317
	SRR3591712	Green floral bud	40.035
	SRR3591713	Yellow flower	31.005
SRP173429	SRR8316895	Juvenile bud stage	20.008
	SRR8316896	Juvenile bud stage	23.989
	SRR8316897	Juvenile bud stage	12.439
	SRR8316894	Third green stage	13.952
	SRR8316900	Third green stage	36.911
	SRR8316901	Third green stage	34.943
	SRR8316898	Complete white stage	10.723
	SRR8316899	Complete white stage	62.316
	SRR8316903	Complete white stage	16.938
	SRR8316902	Silver flowering stage	13.065
	SRR8316904	Silver flowering stage	12.670
	SRR8316905	Silver flowering stage	8.799
	SRR8316906	Gold flowering stage	33.676
	SRR8316907	Gold flowering stage	27.550
	SRR8316908	Gold flowering stage	36.357
SRP132670	SRR6706286	Control	33.426
	SRR6706287	Light intensity 50%	34.050
	SRR6706288	Light intensity 20%	35.854
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.857
	CNS0095593	Slightly white alabastrum(diploid) 2	22.422
	CNS0095594	Slightly white alabastrum(diploid) 3	17.998
	CNS0095595	Whole white alabastrum(diploid) 2	20.817
	CNS0095596	Whole white alabastrum(diploid) 3	14.397
	CNS0095597	Whole white alabastrum(diploid) 4	17.171
	CNS0095598	Silvery flower (diploied) 1	25.240
	CNS0095599	Silvery flower (diploied) 2	19.013
	CNS0095600	Silvery flower (diploied) 3	28.092
	CNS0095601	Golden flower (diploid) 1	20.718
	CNS0095602	Golden flower (diploid) 2	23.643
	CNS0095603	Golden flower (diploid) 3	26.512
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.289
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.637
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.101
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.651
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.984
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.385
	CNS0095610	Silvery flower (tetraploid) 1	31.208
	CNS0095611	Silvery flower (tetraploid) 2	34.144
	CNS0095612	Silvery flower (tetraploid) 3	30.975
	CNS0095613	Golden flower (tetraploid) 1	14.365
	CNS0095614	Golden flower (tetraploid) 2	23.603
	CNS0095615	Golden flower (tetraploid) 3	16.558
CRA001975	CRR073297	Stem 1	31.440
	CRR073298	Stem 2	29.729
	CRR073299	Stem 3	35.503
	CRR073300	Leaf 1	40.121
	CRR073301	Leaf 2	37.983
	CRR073302	Leaf 3	32.949
	CRR073303	Juvenile bud 1	38.326
	CRR073304	Juvenile bud 2	26.386
	CRR073305	Juvenile bud 3	43.024
	CRR073306	Third green 1	20.570
	CRR073307	Third green 2	18.382
	CRR073308	Third green 3	19.421
	CRR073309	Second white 1	23.997
	CRR073310	Second white 2	28.778
	CRR073311	Second white 3	25.084
	CRR073312	Silver flowering 1	20.415
	CRR073313	Silver flowering 2	16.484
	CRR073314	Silver flowering 3	14.308
	CRR073315	Gold flowering 1	19.579
	CRR073316	Gold flowering 2	19.881
	CRR073317	Gold flowering 3	18.617
	CRR073318	Tawny withering 1	43.365
	CRR073319	Tawny withering 2	35.337
	CRR073320	Tawny withering 3	42.021