Gene detail

Detail information of GWHGAAZE030911

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009598180.1	9.8081E-130	PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Nicotiana tomentosiformis]
COG	NP_359997.1	1E-41	cytochrome c1, heme protein precursor
Swissprot	tr\|P25076\|CY11_SOLTU	2E-128	Cytochrome c1-1, heme protein, mitochondrial (Precursor)
trEMBL	tr\|K4C7W7\|K4C7W7_SOLLC	2E-128	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g067920.2.1}
TAIR10	AT5G40810.1	5E-84	Cytochrome C1 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50311131	50315210	+
GWHAAZE00000009	mRNA	50311131	50315210	+
GWHAAZE00000009	exon	50311131	50311196	+
GWHAAZE00000009	exon	50311292	50311333	+
GWHAAZE00000009	exon	50311432	50311535	+
GWHAAZE00000009	exon	50313116	50313276	+
GWHAAZE00000009	exon	50313602	50313734	+
GWHAAZE00000009	exon	50313815	50313889	+
GWHAAZE00000009	exon	50313971	50314042	+
GWHAAZE00000009	exon	50314621	50314737	+
GWHAAZE00000009	exon	50315094	50315210	+
GWHAAZE00000009	five_prime_UTR	50311131	50311192	+
GWHAAZE00000009	CDS	50311193	50311196	+
GWHAAZE00000009	CDS	50311292	50311333	+
GWHAAZE00000009	CDS	50311432	50311535	+
GWHAAZE00000009	CDS	50313116	50313276	+
GWHAAZE00000009	CDS	50313602	50313734	+
GWHAAZE00000009	CDS	50313815	50313889	+
GWHAAZE00000009	CDS	50313971	50314042	+
GWHAAZE00000009	CDS	50314621	50314737	+
GWHAAZE00000009	CDS	50315094	50315210	+

Transcript Sequence
>GWHTAAZE030945 TTTATTCAGACTTCACTCGCTTCACTGCTACTCTCCAATATCTTTCACTCTCTCTAACAATCATGAGGTCAGGGTGGGGAAAGAGTATCAAGATCGGAGGATTCGAACGATTTGGAAGGATCAATCGGTTTTTGGCGAGAGTTACACATCCAACCGACGATGCTAAGTTGTCAAAACTATTAAATGATCCAATCAACCTCACCCGTTTCAAGGCCCCTCTGCCCTCGCCTTTTTTTACAGCAAACGCTGAAAATGTACTTGAATCTTCTGGCATGAAGTCCTTCAGAGTATTGGCACTGATTGGGGCAGGGGTTTCTGGGCTTTTGAGCTTTGCAACTATAGCTTCTGCGGATGAGGCAGAGCGTGGCTTAGAATTTCGTCGGGGTCACCAGGTTTACACACAAGTGTGTGCATCATGCCACTCTATGTCACTGGTTTCTTACCGTGATCTTGTTGGTGTGGCCTATACTGAAGAAGAAACAAAAGCCATGGCAGCTGAGATCGAGCCTTACACTAATGAACAAGCCGCTAGGTTTGCTAATGGCGGGGCTTATCCCCCAGATCTAAGTTTTATCACAAAGGCCCGTCACAATGGTCAGAACTATGTATTTTCTCTTTTAACTGGCTACCGTGACCCTCCAGCTGGTGTTTCGATTCGAGAAGGGCTGCACTATAATCCTTACTTCCCTGGTGGAGCAATTGCTATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTACACCCGCAACAGAGGCACAAATGGGATTCAAATGGATCTTTGTCTTGTCACTGGCACTTCTCCAAGCAGGTTACTACCGACGATTGAAGTGGTCGGTTCTCAAGTCTCGCAAGCTCGTTCTTGATGTTGTCAAGTGA

Network for GWHGAAZE030911

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02167.16	Cytochrom_C1	105	147	1.50E-14
PF02167.16	Cytochrom_C1	148	237	2.60E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00413	CYC1, CYT1, petC	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Two-component system	map02020
		Cardiac muscle contraction	map04260
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0009055	molecular_function	electron transfer activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.008
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.343
	SRR8316896	Juvenile bud stage	1.172
	SRR8316897	Juvenile bud stage	0.559
	SRR8316894	Third green stage	0.276
	SRR8316900	Third green stage	1.673
	SRR8316901	Third green stage	1.070
	SRR8316898	Complete white stage	0.550
	SRR8316899	Complete white stage	2.888
	SRR8316903	Complete white stage	1.265
	SRR8316902	Silver flowering stage	0.459
	SRR8316904	Silver flowering stage	0.629
	SRR8316905	Silver flowering stage	0.322
	SRR8316906	Gold flowering stage	0.786
	SRR8316907	Gold flowering stage	0.770
	SRR8316908	Gold flowering stage	0.811
SRP132670	SRR6706286	Control	1.261
	SRR6706287	Light intensity 50%	0.987
	SRR6706288	Light intensity 20%	1.446
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.241
	CNS0095593	Slightly white alabastrum(diploid) 2	0.887
	CNS0095594	Slightly white alabastrum(diploid) 3	1.281
	CNS0095595	Whole white alabastrum(diploid) 2	1.352
	CNS0095596	Whole white alabastrum(diploid) 3	1.405
	CNS0095597	Whole white alabastrum(diploid) 4	1.590
	CNS0095598	Silvery flower (diploied) 1	2.594
	CNS0095599	Silvery flower (diploied) 2	2.021
	CNS0095600	Silvery flower (diploied) 3	1.071
	CNS0095601	Golden flower (diploid) 1	1.984
	CNS0095602	Golden flower (diploid) 2	0.877
	CNS0095603	Golden flower (diploid) 3	0.716
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.774
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.841
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.940
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.808
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.967
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.175
	CNS0095610	Silvery flower (tetraploid) 1	2.916
	CNS0095611	Silvery flower (tetraploid) 2	2.108
	CNS0095612	Silvery flower (tetraploid) 3	1.289
	CNS0095613	Golden flower (tetraploid) 1	2.380
	CNS0095614	Golden flower (tetraploid) 2	4.368
	CNS0095615	Golden flower (tetraploid) 3	1.048
CRA001975	CRR073297	Stem 1	0.879
	CRR073298	Stem 2	0.883
	CRR073299	Stem 3	0.196
	CRR073300	Leaf 1	0.979
	CRR073301	Leaf 2	0.556
	CRR073302	Leaf 3	0.066
	CRR073303	Juvenile bud 1	0.426
	CRR073304	Juvenile bud 2	0.450
	CRR073305	Juvenile bud 3	0.300
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.035
	CRR073308	Third green 3	0.058
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.055
	CRR073312	Silver flowering 1	0.052
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.188
	CRR073316	Gold flowering 2	0.491
	CRR073317	Gold flowering 3	0.003
	CRR073318	Tawny withering 1	0.942
	CRR073319	Tawny withering 2	1.333
	CRR073320	Tawny withering 3	0.869