Detail information of GWHGAAZE030912


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285307.24.3929E-163PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera]
COGYP_007376943.13E-14small GTP-binding protein domain-containing protein, Ras family
Swissprottr|Q8H156|RAN3_ARATH3E-162GTP-binding nuclear protein Ran-3
trEMBLtr|F6HX89|F6HX89_VITVI2E-162Putative uncharacterized protein {ECO:0000313|EMBL:CCB59559.1}
TAIR10AT5G55190.17E-124RAN GTPase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5031723750319822-
GWHAAZE00000009mRNA5031723750319822-
GWHAAZE00000009exon5031723750317306-
GWHAAZE00000009exon5031755550317632-
GWHAAZE00000009exon5031774150317920-
GWHAAZE00000009exon5031803050318119-
GWHAAZE00000009exon5031920950319326-
GWHAAZE00000009exon5031944050319496-
GWHAAZE00000009exon5031967950319748-
GWHAAZE00000009exon5031982050319822-
GWHAAZE00000009CDS5031982050319822-
GWHAAZE00000009CDS5031967950319748-
GWHAAZE00000009CDS5031944050319496-
GWHAAZE00000009CDS5031920950319326-
GWHAAZE00000009CDS5031803050318119-
GWHAAZE00000009CDS5031774150317920-
GWHAAZE00000009CDS5031755550317632-
GWHAAZE00000009CDS5031723750317306-
Transcript Sequence

Network for GWHGAAZE030912

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras151715.20E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07936RAN RNA transport map03013
Ribosome biogenesis in eukaryotesmap03008

Gene Ontology

GO term OntologyName
GO:0006913biological_processnucleocytoplasmic transport
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf238.567
SRR3591706second leaf97.472
SRR3591707mature leaf158.253
SRR3591708Shoot apex248.432
SRR3591709Stem273.330
SRR3591710White floral bud173.172
SRR3591711White flower426.629
SRR3591712Green floral bud209.489
SRR3591713Yellow flower208.549
SRP173429 SRR8316895Juvenile bud stage 186.518
SRR8316896Juvenile bud stage 243.146
SRR8316897Juvenile bud stage 155.690
SRR8316894Third green stage 101.881
SRR8316900Third green stage 340.915
SRR8316901Third green stage 292.782
SRR8316898Complete white stage 107.314
SRR8316899Complete white stage 388.132
SRR8316903Complete white stage 153.399
SRR8316902Silver flowering stage359.126
SRR8316904Silver flowering stage251.123
SRR8316905Silver flowering stage76.796
SRR8316906Gold flowering stage 312.840
SRR8316907Gold flowering stage 316.928
SRR8316908Gold flowering stage 389.082
SRP132670SRR6706286Control188.105
SRR6706287Light intensity 50%213.180
SRR6706288Light intensity 20%237.531
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1205.277
CNS0095593Slightly white alabastrum(diploid) 2233.620
CNS0095594Slightly white alabastrum(diploid) 3189.336
CNS0095595Whole white alabastrum(diploid) 2191.025
CNS0095596Whole white alabastrum(diploid) 3173.444
CNS0095597Whole white alabastrum(diploid) 4145.475
CNS0095598Silvery flower (diploied) 1172.682
CNS0095599Silvery flower (diploied) 2183.356
CNS0095600Silvery flower (diploied) 3289.355
CNS0095601Golden flower (diploid) 1146.283
CNS0095602Golden flower (diploid) 2197.382
CNS0095603Golden flower (diploid) 3194.828
CNS0095604Slightly white alabastrum(tetraploid) 1252.127
CNS0095605Slightly white alabastrum(tetraploid) 2229.465
CNS0095606Slightly white alabastrum(tetraploid) 3395.988
CNS0095607Whole white alabastrum(tetraploid) 1149.631
CNS0095608Whole white alabastrum(tetraploid) 2137.038
CNS0095609Whole white alabastrum(tetraploid) 3279.311
CNS0095610Silvery flower (tetraploid) 1459.924
CNS0095611Silvery flower (tetraploid) 2223.745
CNS0095612Silvery flower (tetraploid) 3212.399
CNS0095613Golden flower (tetraploid) 1154.601
CNS0095614Golden flower (tetraploid) 2203.050
CNS0095615Golden flower (tetraploid) 3128.501
CRA001975CRR073297Stem 1234.789
CRR073298Stem 2229.594
CRR073299Stem 3258.087
CRR073300Leaf 1206.002
CRR073301Leaf 2211.103
CRR073302Leaf 3277.529
CRR073303Juvenile bud 1304.297
CRR073304Juvenile bud 2181.692
CRR073305Juvenile bud 3264.456
CRR073306Third green 1115.358
CRR073307Third green 2137.051
CRR073308Third green 3136.457
CRR073309Second white 1207.774
CRR073310Second white 2165.957
CRR073311Second white 3121.559
CRR073312Silver flowering 1146.880
CRR073313Silver flowering 2184.748
CRR073314Silver flowering 3122.480
CRR073315Gold flowering 1332.349
CRR073316Gold flowering 2380.639
CRR073317Gold flowering 3298.521
CRR073318Tawny withering 1377.185
CRR073319Tawny withering 2415.717
CRR073320Tawny withering 3444.417