Gene detail

Detail information of GWHGAAZE030914

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010249966.1	0	PREDICTED: serine-threonine kinase receptor-associated protein-like [Nelumbo nucifera]
COG	YP_003167824.1	1E-31	WD-40 repeat-containing protein
Swissprot	tr\|Q38884\|EIF3I_ARATH	2E-23	Eukaryotic translation initiation factor 3 subunit I {ECO:0000255\|HAMAP-Rule:MF_03008}
trEMBL	tr\|A0A059BSC8\|A0A059BSC8_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW68992.1}
TAIR10	AT3G15610.1	5E-126	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50344414	50350021	+
GWHAAZE00000009	mRNA	50344414	50350021	+
GWHAAZE00000009	exon	50344414	50344531	+
GWHAAZE00000009	exon	50345598	50345733	+
GWHAAZE00000009	exon	50346310	50346391	+
GWHAAZE00000009	exon	50347985	50348084	+
GWHAAZE00000009	exon	50349023	50349113	+
GWHAAZE00000009	exon	50349242	50349381	+
GWHAAZE00000009	exon	50349732	50350021	+
GWHAAZE00000009	CDS	50344414	50344531	+
GWHAAZE00000009	CDS	50345598	50345733	+
GWHAAZE00000009	CDS	50346310	50346391	+
GWHAAZE00000009	CDS	50347985	50348084	+
GWHAAZE00000009	CDS	50349023	50349113	+
GWHAAZE00000009	CDS	50349242	50349381	+
GWHAAZE00000009	CDS	50349732	50350021	+

Transcript Sequence
>GWHTAAZE030948 ATGGATAGGAAGAAGGTGGCCGTTCCGCTCGTCTGTCATGGCCATTCTCGGCCGGTTGTTGATTTGTTCTACAGCCCAGTCACTCCCGATGGGTTTTTCCTTATCAGTGCCAGCAAGGATTCTACTCCAATGCTGAGAAATGGAGAGACTGGAGATTGGATTGGAACTTTTGAAGGGCATAAAGGTGCTGTGTGGAGCTGCTGCTTGGATACTAATGCCTTACGAGCTGCATCTGCATCTGCTGATTTTACTGCGAAATTGTGGGACGCGTTAACTGGGGATGTACTCCACTCATTTGACCACAAACACATTGTTCGAGCATGTGCCTTTTCAGAGGATACATGTCTTCTACTCACTGGTGGTTTTGAAAAAATACTGCGCATATATGATTTAAATCAGCCAGATGCACCTCCAAGAGAAGTTGACAACTCTCCAGAGTCATCTGTAACCAGCACTGAAGTCAGTCAGGACGGCCGCTATATAACCACGGCTGATGGGTCCACTGTTAAGTTCTGGGATGCTAACCATTTTGGATTGGTGAAGAGCTACAACATGCCCTTCAAGGTGGAGTCAGCATCACTGGAACCGAAGCTGGGGAATAAGTTCATTGCTGGAGGAGAAGATATGTGGATTCATATGTTCGACTTTCATACTGGAGAAGAGATTGGATGCAACAAGGGTCACCATGGTCCAGTACACTGTGTGAGGTTCGCACCAGGAGGGGAATCATACGCATCGGGATCTGAAGATGGAACCATAAGAATATGGCAGACAGGGCCATTGAACGAGAATGAGGGGGCGGCGTCACTTTCGAATGGGCCGGCGAGTAGTAGGAAAGTGAAGGATGCTGCTGATGCTGCTGATGAGGTGATTCAGAAGGTAGAAGGTTTTCATATTGCCAAAGGTGACAACAAGACCGGAGGTCCGGAGGAAAAGGCTCCATCAGCGGATGTTTGA

Network for GWHGAAZE030914

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	54	89	0.0014
PF00400.33	WD40	94	130	0.011
PF00400.33	WD40	222	256	5.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K13137	STRAP, UNRIP	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.581
	SRR3591706	second leaf	35.255
	SRR3591707	mature leaf	39.853
	SRR3591708	Shoot apex	67.007
	SRR3591709	Stem	66.729
	SRR3591710	White floral bud	56.586
	SRR3591711	White flower	62.913
	SRR3591712	Green floral bud	106.645
	SRR3591713	Yellow flower	65.693
SRP173429	SRR8316895	Juvenile bud stage	48.047
	SRR8316896	Juvenile bud stage	75.732
	SRR8316897	Juvenile bud stage	32.493
	SRR8316894	Third green stage	26.012
	SRR8316900	Third green stage	97.052
	SRR8316901	Third green stage	93.204
	SRR8316898	Complete white stage	20.621
	SRR8316899	Complete white stage	61.186
	SRR8316903	Complete white stage	30.242
	SRR8316902	Silver flowering stage	18.063
	SRR8316904	Silver flowering stage	25.403
	SRR8316905	Silver flowering stage	12.659
	SRR8316906	Gold flowering stage	51.629
	SRR8316907	Gold flowering stage	54.111
	SRR8316908	Gold flowering stage	43.067
SRP132670	SRR6706286	Control	85.016
	SRR6706287	Light intensity 50%	84.227
	SRR6706288	Light intensity 20%	86.415
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	109.696
	CNS0095593	Slightly white alabastrum(diploid) 2	117.677
	CNS0095594	Slightly white alabastrum(diploid) 3	124.224
	CNS0095595	Whole white alabastrum(diploid) 2	123.608
	CNS0095596	Whole white alabastrum(diploid) 3	152.108
	CNS0095597	Whole white alabastrum(diploid) 4	130.740
	CNS0095598	Silvery flower (diploied) 1	55.025
	CNS0095599	Silvery flower (diploied) 2	45.477
	CNS0095600	Silvery flower (diploied) 3	47.607
	CNS0095601	Golden flower (diploid) 1	48.768
	CNS0095602	Golden flower (diploid) 2	48.531
	CNS0095603	Golden flower (diploid) 3	51.117
	CNS0095604	Slightly white alabastrum(tetraploid) 1	122.671
	CNS0095605	Slightly white alabastrum(tetraploid) 2	119.432
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.321
	CNS0095607	Whole white alabastrum(tetraploid) 1	128.569
	CNS0095608	Whole white alabastrum(tetraploid) 2	123.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	99.292
	CNS0095610	Silvery flower (tetraploid) 1	52.623
	CNS0095611	Silvery flower (tetraploid) 2	53.122
	CNS0095612	Silvery flower (tetraploid) 3	52.988
	CNS0095613	Golden flower (tetraploid) 1	53.385
	CNS0095614	Golden flower (tetraploid) 2	58.624
	CNS0095615	Golden flower (tetraploid) 3	43.977
CRA001975	CRR073297	Stem 1	89.676
	CRR073298	Stem 2	86.200
	CRR073299	Stem 3	87.949
	CRR073300	Leaf 1	115.513
	CRR073301	Leaf 2	110.569
	CRR073302	Leaf 3	94.802
	CRR073303	Juvenile bud 1	101.418
	CRR073304	Juvenile bud 2	72.842
	CRR073305	Juvenile bud 3	82.324
	CRR073306	Third green 1	45.963
	CRR073307	Third green 2	46.478
	CRR073308	Third green 3	45.452
	CRR073309	Second white 1	51.351
	CRR073310	Second white 2	51.007
	CRR073311	Second white 3	47.248
	CRR073312	Silver flowering 1	47.902
	CRR073313	Silver flowering 2	45.452
	CRR073314	Silver flowering 3	48.312
	CRR073315	Gold flowering 1	43.410
	CRR073316	Gold flowering 2	49.586
	CRR073317	Gold flowering 3	42.155
	CRR073318	Tawny withering 1	77.966
	CRR073319	Tawny withering 2	70.563
	CRR073320	Tawny withering 3	82.199