Detail information of GWHGAAZE030938


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98070.10unnamed protein product [Coffea canephora]
COGYP_003890644.15E-36WD40 repeat-containing protein
Swissprottr|Q9C827|COB22_ARATH0Coatomer subunit beta'-2
trEMBLtr|A0A068TP13|A0A068TP13_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO98070.1}
TAIR10AT1G52360.10Coatomer, beta' subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5069698050710066-
GWHAAZE00000009mRNA5069698050710066-
GWHAAZE00000009exon5069698050697159-
GWHAAZE00000009exon5069904450699218-
GWHAAZE00000009exon5069956450699670-
GWHAAZE00000009exon5070098850701081-
GWHAAZE00000009exon5070116550701361-
GWHAAZE00000009exon5070191650701987-
GWHAAZE00000009exon5070218950702303-
GWHAAZE00000009exon5070262350702739-
GWHAAZE00000009exon5070283050702921-
GWHAAZE00000009exon5070302750703203-
GWHAAZE00000009exon5070333450703408-
GWHAAZE00000009exon5070350750703647-
GWHAAZE00000009exon5070398250704170-
GWHAAZE00000009exon5070509850705314-
GWHAAZE00000009exon5070570450705772-
GWHAAZE00000009exon5070631750706465-
GWHAAZE00000009exon5070654250706673-
GWHAAZE00000009exon5070676250707087-
GWHAAZE00000009exon5070720850707244-
GWHAAZE00000009exon5070895250709006-
GWHAAZE00000009exon5070919350709254-
GWHAAZE00000009exon5070937150709391-
GWHAAZE00000009exon5070968250710066-
GWHAAZE00000009five_prime_UTR5070983250710066-
GWHAAZE00000009CDS5070968250709831-
GWHAAZE00000009CDS5070937150709391-
GWHAAZE00000009CDS5070919350709254-
GWHAAZE00000009CDS5070895250709006-
GWHAAZE00000009CDS5070720850707244-
GWHAAZE00000009CDS5070676250707087-
GWHAAZE00000009CDS5070654250706673-
GWHAAZE00000009CDS5070631750706465-
GWHAAZE00000009CDS5070570450705772-
GWHAAZE00000009CDS5070509850705314-
GWHAAZE00000009CDS5070398250704170-
GWHAAZE00000009CDS5070350750703647-
GWHAAZE00000009CDS5070333450703408-
GWHAAZE00000009CDS5070302750703203-
GWHAAZE00000009CDS5070283050702921-
GWHAAZE00000009CDS5070262350702739-
GWHAAZE00000009CDS5070218950702303-
GWHAAZE00000009CDS5070191650701987-
GWHAAZE00000009CDS5070116550701361-
GWHAAZE00000009CDS5070098850701081-
GWHAAZE00000009CDS5069956450699670-
GWHAAZE00000009CDS5069904450699218-
GWHAAZE00000009CDS5069698050697159-
Transcript Sequence

Network for GWHGAAZE030938

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401381748.10E-06
PF00400.33WD401812180.00026
PF00400.33WD402242625.30E-06
PF00400.33WD402673036.60E-09
PF04053.15Coatomer_WDAD3668104.80E-166
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport
GO:0030117cellular_componentmembrane coat
GO:0005515molecular_functionprotein binding
GO:0005198molecular_functionstructural molecule activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf117.893
SRR3591706second leaf56.912
SRR3591707mature leaf31.535
SRR3591708Shoot apex63.916
SRR3591709Stem67.712
SRR3591710White floral bud62.026
SRR3591711White flower63.553
SRR3591712Green floral bud91.133
SRR3591713Yellow flower62.858
SRP173429 SRR8316895Juvenile bud stage 44.289
SRR8316896Juvenile bud stage 59.149
SRR8316897Juvenile bud stage 31.443
SRR8316894Third green stage 30.552
SRR8316900Third green stage 76.595
SRR8316901Third green stage 71.171
SRR8316898Complete white stage 24.024
SRR8316899Complete white stage 63.707
SRR8316903Complete white stage 46.811
SRR8316902Silver flowering stage22.582
SRR8316904Silver flowering stage39.286
SRR8316905Silver flowering stage17.035
SRR8316906Gold flowering stage 52.183
SRR8316907Gold flowering stage 51.000
SRR8316908Gold flowering stage 52.641
SRP132670SRR6706286Control38.723
SRR6706287Light intensity 50%51.622
SRR6706288Light intensity 20%57.411
CNP0000432CNS0095592Slightly white alabastrum(diploid) 145.253
CNS0095593Slightly white alabastrum(diploid) 244.033
CNS0095594Slightly white alabastrum(diploid) 339.128
CNS0095595Whole white alabastrum(diploid) 239.892
CNS0095596Whole white alabastrum(diploid) 340.036
CNS0095597Whole white alabastrum(diploid) 432.609
CNS0095598Silvery flower (diploied) 132.642
CNS0095599Silvery flower (diploied) 231.857
CNS0095600Silvery flower (diploied) 360.911
CNS0095601Golden flower (diploid) 124.576
CNS0095602Golden flower (diploid) 254.500
CNS0095603Golden flower (diploid) 350.472
CNS0095604Slightly white alabastrum(tetraploid) 157.614
CNS0095605Slightly white alabastrum(tetraploid) 244.030
CNS0095606Slightly white alabastrum(tetraploid) 3101.582
CNS0095607Whole white alabastrum(tetraploid) 136.945
CNS0095608Whole white alabastrum(tetraploid) 230.198
CNS0095609Whole white alabastrum(tetraploid) 380.499
CNS0095610Silvery flower (tetraploid) 158.237
CNS0095611Silvery flower (tetraploid) 247.922
CNS0095612Silvery flower (tetraploid) 343.853
CNS0095613Golden flower (tetraploid) 127.652
CNS0095614Golden flower (tetraploid) 250.527
CNS0095615Golden flower (tetraploid) 341.426
CRA001975CRR073297Stem 161.548
CRR073298Stem 257.053
CRR073299Stem 352.074
CRR073300Leaf 167.927
CRR073301Leaf 257.256
CRR073302Leaf 357.796
CRR073303Juvenile bud 152.217
CRR073304Juvenile bud 245.463
CRR073305Juvenile bud 367.922
CRR073306Third green 121.607
CRR073307Third green 217.265
CRR073308Third green 323.948
CRR073309Second white 128.861
CRR073310Second white 229.531
CRR073311Second white 338.050
CRR073312Silver flowering 133.566
CRR073313Silver flowering 240.714
CRR073314Silver flowering 330.025
CRR073315Gold flowering 117.716
CRR073316Gold flowering 237.682
CRR073317Gold flowering 323.427
CRR073318Tawny withering 145.131
CRR073319Tawny withering 234.163
CRR073320Tawny withering 354.544