Gene detail

Detail information of GWHGAAZE030946

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011080823.1	PREDICTED: kinesin-13A [Sesamum indicum]
Swissprot	tr\|Q940B8\|KIN13_ARATH	Kinesin-13A
trEMBL	tr\|Q9AVP4\|Q9AVP4_TOBAC	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR10	AT3G16060.1	ATP binding microtubule motor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50848793	50854095	+
GWHAAZE00000009	mRNA	50848793	50854095	+
GWHAAZE00000009	exon	50848793	50848945	+
GWHAAZE00000009	exon	50849059	50849280	+
GWHAAZE00000009	exon	50849843	50850037	+
GWHAAZE00000009	exon	50850248	50850355	+
GWHAAZE00000009	exon	50850813	50850890	+
GWHAAZE00000009	exon	50851020	50851101	+
GWHAAZE00000009	exon	50851350	50851509	+
GWHAAZE00000009	exon	50851598	50851900	+
GWHAAZE00000009	exon	50852696	50852914	+
GWHAAZE00000009	exon	50852995	50853346	+
GWHAAZE00000009	exon	50853525	50853590	+
GWHAAZE00000009	exon	50853916	50854095	+
GWHAAZE00000009	CDS	50848793	50848945	+
GWHAAZE00000009	CDS	50849059	50849280	+
GWHAAZE00000009	CDS	50849843	50850037	+
GWHAAZE00000009	CDS	50850248	50850355	+
GWHAAZE00000009	CDS	50850813	50850890	+
GWHAAZE00000009	CDS	50851020	50851101	+
GWHAAZE00000009	CDS	50851350	50851509	+
GWHAAZE00000009	CDS	50851598	50851900	+
GWHAAZE00000009	CDS	50852696	50852914	+
GWHAAZE00000009	CDS	50852995	50853346	+
GWHAAZE00000009	CDS	50853525	50853590	+
GWHAAZE00000009	CDS	50853916	50854095	+

Transcript Sequence
>GWHTAAZE030980 GGGAGACAGGTGCAGAGATCCGGTGCGTCGACGGCGCATCACCAGCGTCAGTACTCGGACAATTTCTTGGAGAACTCATCTAACGGCCGATGGCTTCAATCAGCTGGTCTTCAACACCTGCAGTCATCAAACACATCTATTCCTCCTCTACAAGACGTTGGCTACTATGGCGGTGGTGGTCAGGGTTCCAGAACCTATAGGAATCCGCAGAGGACTCTTAGCGGAGGAAGTGACCTTTTTGCGGAGCCATTGACGCCGCCGGCGAGCTCGCGGCCGCCAAACCAGAGGAAGAATGGTGATGGGCACGTGTCGCCGAGCGAGTTCAGTCCTGGACTCCTAGATCTACACTCCTTCGATACTGAGCTTCTTCCCGAGATGCCTGTTCCTGGCCTGTATGATGCTTCTTCTATGCATCATTCTGTTCGAGGCAGAAGCTTTGATGACTCCGAGCCGTTCTATGGAAACAACAAACAAACTGGTCGAGCTCGTGGTTTACCAGATAACAATCTTTTGAAAAGTTTTGCTCCAGACAAAGAGAAGGCTAGCAATGTTGCAAAGATCAAAGTGGTGGTGCGCAAGAGACCACTAAATAAAAAGGAGTTGGCTAAGAATGAGGAAGATATCATAACTATAAAATCACACTCGAGTTCTCTAACAGTTCACGAGACTAAACTTAAGGTTGACCTAACAGAATATGTGGAGAAGCATGAATTTGTTTTTGATGCAGTGCTGAATGAGGAGGTCTCAAATGATGAGGTTTATTGTGAAACCGTGGAGCCCATAGTTCCAATAATTTTCCAACGCACAAAAGCAACTTGCTTTGCATATGGGCAGACAGGAAGCGGAAAAACTTATACTATGAACCCATTGCCCCTTAAAGCATCTCGGGATATATTGAGAATGATGCACCATACTTACCGGAATCAAGGTTTTCAATTGTTTGTTAGCTTCTTCGAGATATATGGTGGAAAACTTTATGATCTTCTGAATGATCGGAAGAAACTTTGCATGAGAGAGGATGGTAAACAGCAAGTTTGCATTGTGGGTTTGCAAGAATACAAAGTATCCGATGTGGAGACAATTAAGGAGCTCATTGAGAAAGGATCTGCAACAAGAAGTACTGGCACAACTGGTGCAAATGAAGAATCCTCCCGGTCACATGCCATACTTCAGCTTGTTATTAAGAGATCATCTGATGGGAGTGAAACTAAGCCTCCTCGAGTTGTTGGCAAGCTTTCCTTCATAGATCTTGCTGGAAGTGAACGCGGTGCAGATACTACTGACAATGATAAGCAAACAAGAATGGAAGGTGCCGAGATCAATAAAAGTTTGCTTGCATTAAAGGAATGCATAAGAGCTCTTGATAATGATCAGGGTCATATTCCTTTTAGAGGCAGTAAATTAACTGAAGTCCTAAGGGATTCATTTGTTGGAGATTCTCGAACTGTTATGATATCCTGCATTTCACCAAACTCTGGGTCTTGTGAACATACTCTTAACACTTTAAGATACGCTGACAGGGTGAAGAGCCTTTCAAAAGCGAACAAGAAGGAAATATCAAGTTCAACCTTAAACCTCAAGGAATCGACAGCAATGCCCTTATCTTCTGTTTTACCCACCATATCAACCTATGAAGACGACATAGCTGATTCATGGCCTGAACAAGCTGATGGAGAGGATTATGATGCATCAGAGGAGTACTATGAGCAAGAGAAGCCATCATGGAAAAAGAATAACAAAGTTGAAGCGTACAATCATTCAACTTCAGAAGATAAAATGAGGAGAGCCAATGGCCAGACAAAATGGAAGGAGCCAATGAAATTTGATGCAAAACACATGCATTCGGATGATGATTTAAATGCGTTGTTAAAGGAAGAGGAAGATCTTGTAAACGCTCACCGGAAACAAGTGGAGGAGACGATGGATATTGTCAGAGAGGAGATGAGCCTTTTAGTTGAGGCAGATCAACCAGGAAATCATTTGGATGATTACGTCTCTAAATTGAACGCAATCCTATCTCAGAAGGCTGCTGGCATCCTCCAATTACAAAACCGTCTGGCTCATTTTCAAAGGCGTCTAAAGGAGCATAATGTTCTAGTTTCTTCTTCTGGTTACTAA

Network for GWHGAAZE030946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00225.24	Kinesin	192	510	6.80E-95

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10393	KIF2_24, MCAK	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0007018	biological_process	microtubule-based movement
GO:0003777	molecular_function	microtubule motor activity
GO:0005524	molecular_function	ATP binding
GO:0008017	molecular_function	microtubule binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.200
	SRR3591706	second leaf	43.781
	SRR3591707	mature leaf	14.963
	SRR3591708	Shoot apex	68.388
	SRR3591709	Stem	34.975
	SRR3591710	White floral bud	24.760
	SRR3591711	White flower	17.983
	SRR3591712	Green floral bud	35.124
	SRR3591713	Yellow flower	12.273
SRP173429	SRR8316895	Juvenile bud stage	24.916
	SRR8316896	Juvenile bud stage	29.523
	SRR8316897	Juvenile bud stage	14.850
	SRR8316894	Third green stage	15.713
	SRR8316900	Third green stage	34.737
	SRR8316901	Third green stage	32.783
	SRR8316898	Complete white stage	9.689
	SRR8316899	Complete white stage	37.383
	SRR8316903	Complete white stage	16.177
	SRR8316902	Silver flowering stage	4.137
	SRR8316904	Silver flowering stage	7.184
	SRR8316905	Silver flowering stage	3.481
	SRR8316906	Gold flowering stage	14.995
	SRR8316907	Gold flowering stage	11.412
	SRR8316908	Gold flowering stage	13.991
SRP132670	SRR6706286	Control	11.790
	SRR6706287	Light intensity 50%	15.245
	SRR6706288	Light intensity 20%	18.375
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.075
	CNS0095593	Slightly white alabastrum(diploid) 2	25.198
	CNS0095594	Slightly white alabastrum(diploid) 3	16.579
	CNS0095595	Whole white alabastrum(diploid) 2	16.722
	CNS0095596	Whole white alabastrum(diploid) 3	13.802
	CNS0095597	Whole white alabastrum(diploid) 4	15.155
	CNS0095598	Silvery flower (diploied) 1	12.184
	CNS0095599	Silvery flower (diploied) 2	12.820
	CNS0095600	Silvery flower (diploied) 3	13.752
	CNS0095601	Golden flower (diploid) 1	8.377
	CNS0095602	Golden flower (diploid) 2	11.178
	CNS0095603	Golden flower (diploid) 3	9.747
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.785
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.494
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.367
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.809
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.865
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.022
	CNS0095610	Silvery flower (tetraploid) 1	14.415
	CNS0095611	Silvery flower (tetraploid) 2	11.561
	CNS0095612	Silvery flower (tetraploid) 3	20.248
	CNS0095613	Golden flower (tetraploid) 1	6.756
	CNS0095614	Golden flower (tetraploid) 2	14.367
	CNS0095615	Golden flower (tetraploid) 3	7.288
CRA001975	CRR073297	Stem 1	27.996
	CRR073298	Stem 2	27.834
	CRR073299	Stem 3	25.230
	CRR073300	Leaf 1	28.919
	CRR073301	Leaf 2	26.095
	CRR073302	Leaf 3	23.859
	CRR073303	Juvenile bud 1	21.421
	CRR073304	Juvenile bud 2	20.320
	CRR073305	Juvenile bud 3	25.527
	CRR073306	Third green 1	4.609
	CRR073307	Third green 2	5.327
	CRR073308	Third green 3	5.517
	CRR073309	Second white 1	5.101
	CRR073310	Second white 2	4.294
	CRR073311	Second white 3	3.533
	CRR073312	Silver flowering 1	2.417
	CRR073313	Silver flowering 2	2.362
	CRR073314	Silver flowering 3	1.479
	CRR073315	Gold flowering 1	5.582
	CRR073316	Gold flowering 2	9.409
	CRR073317	Gold flowering 3	7.415
	CRR073318	Tawny withering 1	16.788
	CRR073319	Tawny withering 2	14.178
	CRR073320	Tawny withering 3	19.667