Gene detail

Detail information of GWHGAAZE030959

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009793771.1	0	PREDICTED: notchless protein homolog 1-like [Nicotiana sylvestris]
COG	YP_002463148.1	7E-29	NB-ARC domain-containing protein
Swissprot	tr\|Q8RXA7\|SCD1_ARATH	1E-13	DENN domain and WD repeat-containing protein SCD1 {ECO:0000305}
trEMBL	tr\|F6HYD3\|F6HYD3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59456.1}
TAIR10	AT4G34380.1	1E-58	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	50992600	50996439	+
GWHAAZE00000009	mRNA	50992600	50996439	+
GWHAAZE00000009	exon	50992600	50993072	+
GWHAAZE00000009	exon	50993176	50993314	+
GWHAAZE00000009	exon	50995717	50996439	+
GWHAAZE00000009	CDS	50992600	50993072	+
GWHAAZE00000009	CDS	50993176	50993314	+
GWHAAZE00000009	CDS	50995717	50996439	+

Transcript Sequence
>GWHTAAZE030993 ATGGCATCAATATTAGATCCAACCAACAATAACTCTTCTTCACCTCCAAATCCATCATTTGCAATAAGAGGAACCCAAAACCAAACCAATTTCATCAGAAGCATTTCCCTCAAAGAACAACAACAATCCTACTCCGAAGCTCCCTCTACACCTTCCCGCTTAAGCTCCCCATCCTTCCCTCCATACCTCCACTCCTCCTCCCAACCCTCCTCTCCCGGCCGCCTCTCCTTCACTACGGCTGCCGCCAAACTCGATGCTGACAACCACCTCCACCATGCTGCCACATACCGGTGCATCTCCTCGGTCCTCAAAAAGGACGGCCAGATCTTGTCAATCGCCTCATCCAATGGCCTAGTTTACACGGGTTCCGAGAGCAACATCGTTCGGGTTTGGAAACTACCGGAATTCACTGAGTGCGGTCAGCTAAAGACGAAGTCGAGCATGGTGGTGGCTCTACAAGTGTCAAACGATAGGGTTTATGCTGCGTATGCTGACTGTAAGATACGCGTGTGGCGACGGACCTGGGAAGGCGTGACGAAACACGTTCGGCTGGCAACTATTCCAAAAAACGGAAGTTATGTCCGGAGTTACATCGCCGGTAAAGATAGGATGATGAAGCATATGGGTCCAATTTCATCGCTCGCAATCAATGTATCTGAAGATATCATTTACTCCTCATCCCTCGACAAGACTGTCAAGGTATGGCGAATTTCCGATCTCAAATGCCTCGAGACTATTCAAGCGCACTCAGAGCCAATCAATGCAATTGTAGTGGGCGATGACGGAGTACTCTACACTGCGTCTGATGATGCCACGGTTAGAGTGTGGCGCCGCAATTTCTGCAGCGGTAATAGGCCACATGCACTCACTGTCACCCTCTCAGCCAAGTACTCGCCGGTGAAAACCCTAACCCTAACTCCAGATGGTGGGTTGTTGTATGGTGGGTGCACCGATGGTTACATACACTATTGGCTAAAAGGTTGGTTTTCGGGACAATTGCAACATGGTGGCGTACTACAAGGGCACACCCATGCTGTTATGTGCTTGGCCACCGTGGCAAATTATGTTGTCAGTGGCTCGGCTGACTCAACCAGTAGGGTTTGGGCGAGAGAGCAAGATGGTCAGCATACGTGTCTAGCGGTCTTGGTGGGTCATAGGGGACCAATAAGGTGCGTTGCAGCATTTCCCGGGCGCCTGACGGATGAGAGCGAAAATGGTTGTACAGTTTGCACAGGAAGTCTTGATGGTGTGCTTAAAGTCTGGCGCATCAGCTGCACGAGTGGTGCAAGCAAGTGTTCCACTCCAATTGCACGTGATTATTTTGATCTAACTTAA

Network for GWHGAAZE030959

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	207	235	0.037
PF00400.33	WD40	241	276	0.0074
PF00400.33	WD40	336	368	0.061
PF00400.33	WD40	377	421	0.00024

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.561
	SRR3591706	second leaf	0.597
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.393
	SRR3591709	Stem	0.644
	SRR3591710	White floral bud	1.218
	SRR3591711	White flower	1.973
	SRR3591712	Green floral bud	0.447
	SRR3591713	Yellow flower	0.417
SRP173429	SRR8316895	Juvenile bud stage	1.959
	SRR8316896	Juvenile bud stage	2.373
	SRR8316897	Juvenile bud stage	0.980
	SRR8316894	Third green stage	1.143
	SRR8316900	Third green stage	2.377
	SRR8316901	Third green stage	2.788
	SRR8316898	Complete white stage	0.257
	SRR8316899	Complete white stage	1.981
	SRR8316903	Complete white stage	0.963
	SRR8316902	Silver flowering stage	0.110
	SRR8316904	Silver flowering stage	0.103
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.061
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.378
SRP132670	SRR6706286	Control	2.910
	SRR6706287	Light intensity 50%	3.205
	SRR6706288	Light intensity 20%	3.297
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.581
	CNS0095593	Slightly white alabastrum(diploid) 2	0.347
	CNS0095594	Slightly white alabastrum(diploid) 3	2.109
	CNS0095595	Whole white alabastrum(diploid) 2	0.229
	CNS0095596	Whole white alabastrum(diploid) 3	0.889
	CNS0095597	Whole white alabastrum(diploid) 4	0.693
	CNS0095598	Silvery flower (diploied) 1	1.191
	CNS0095599	Silvery flower (diploied) 2	0.828
	CNS0095600	Silvery flower (diploied) 3	0.353
	CNS0095601	Golden flower (diploid) 1	0.862
	CNS0095602	Golden flower (diploid) 2	1.029
	CNS0095603	Golden flower (diploid) 3	0.767
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.442
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.179
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.608
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.222
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.321
	CNS0095610	Silvery flower (tetraploid) 1	0.021
	CNS0095611	Silvery flower (tetraploid) 2	0.418
	CNS0095612	Silvery flower (tetraploid) 3	0.119
	CNS0095613	Golden flower (tetraploid) 1	0.051
	CNS0095614	Golden flower (tetraploid) 2	0.138
	CNS0095615	Golden flower (tetraploid) 3	0.143
CRA001975	CRR073297	Stem 1	7.092
	CRR073298	Stem 2	8.332
	CRR073299	Stem 3	8.445
	CRR073300	Leaf 1	5.503
	CRR073301	Leaf 2	4.459
	CRR073302	Leaf 3	5.913
	CRR073303	Juvenile bud 1	1.648
	CRR073304	Juvenile bud 2	3.190
	CRR073305	Juvenile bud 3	4.119
	CRR073306	Third green 1	0.038
	CRR073307	Third green 2	0.072
	CRR073308	Third green 3	0.192
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.136
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.031
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.327
	CRR073319	Tawny withering 2	0.886
	CRR073320	Tawny withering 3	1.076