Gene detail

Detail information of GWHGAAZE030961

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008228468.1	1.2471E-161	PREDICTED: F-box/WD repeat-containing protein 1A-like [Prunus mume]
COG	YP_002463148.1	1E-23	NB-ARC domain-containing protein
Swissprot	tr\|Q6H8D6\|COB23_ORYSJ	3E-10	Putative coatomer subunit beta'-3
trEMBL	tr\|F6HYD1\|F6HYD1_VITVI	6E-160	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59454.1}
TAIR10	AT3G50390.1	2E-53	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51016836	51017720	-
GWHAAZE00000009	mRNA	51016836	51017720	-
GWHAAZE00000009	exon	51016836	51017720	-
GWHAAZE00000009	CDS	51016836	51017720	-

Transcript Sequence
>GWHTAAZE030995 ATGTCGCTCACAGAAAGCTTCCGACCAAAGAAAACTGCAACGCTACCTCGGAAAAGGCCATTCTTTTCGTATCCACGAAAGAACACCCATAAACACAGAGATTACATCTCATCCATAGCTTACAACCAGACAGAAAGGCTTTTATACACAGGTTCATGGGATAAAACGGTCAAAGCTTGGAAAGTTTCGGAAAGGATATGCGTGGATTCATTTGTGGCTCATGACGGTCATGTTAATGCAATTGTGATAAACCAACAAGATGGGTGCGTCTTCACTTGCTCCTCCGATGGCTCGGTGAAGATATGGAGAAGGGTTTTCGGAGAAAGCTCACATATTCTTACTATGACACTAAAGTTCCAGCCCTCACCGGTTAATGCCTTAGCCTTGAGTTCGACCACTAATGATTGCTTCCTTTACTCCGGCTCGTCAGACGGGCTCATAAACTTTTGGGAGAAGGAGAAAATGTCGGGTCGGTTCAACCACGGAGGATTTTTACAAGGTCATCATTTCTCAGTTCTTTGCTTAGTATCGATAGGGGACTTGCTCCTTAGCGGCTCAGAAGACGCAACTATTAGGATATGGAGGAGAGAGGAAGGGAACACGTTACATACATGTCTAGCAGTCATAGATGGCCACCATGGGCCAGTGAGGTGCTTAGCCACTTCAATTGAAACAGAGGACATTGTTATAGGATTGTTAGTTTATAGTGCGAGCTTGGATCAAACTTTTAAGGTATGGCGGGTCAAAGTTTATCCAGCTGAGAAAGCCAAATCTTCGGAGAACTTGTTGGCTATCGATCCACAATCGGAAGCGGTGGAGTGTGAGATAAGCCCTGTGTTATCTCCTTCATGGGTTGAGAAGAAAATCCAAGGAAGCCATTTTTAG

Network for GWHGAAZE030961

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	30	61	0.004
PF00400.33	WD40	67	102	0.00057
PF00400.33	WD40	164	194	0.00058
PF00400.33	WD40	204	246	0.056

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.145
	SRR3591706	second leaf	0.317
	SRR3591707	mature leaf	0.179
	SRR3591708	Shoot apex	1.335
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.500
	SRR3591711	White flower	0.029
	SRR3591712	Green floral bud	1.018
	SRR3591713	Yellow flower	0.112
SRP173429	SRR8316895	Juvenile bud stage	0.808
	SRR8316896	Juvenile bud stage	1.162
	SRR8316897	Juvenile bud stage	0.364
	SRR8316894	Third green stage	1.671
	SRR8316900	Third green stage	2.908
	SRR8316901	Third green stage	1.515
	SRR8316898	Complete white stage	0.307
	SRR8316899	Complete white stage	0.253
	SRR8316903	Complete white stage	0.348
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.138
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	2.912
	SRR6706287	Light intensity 50%	3.591
	SRR6706288	Light intensity 20%	4.206
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.630
	CNS0095593	Slightly white alabastrum(diploid) 2	1.101
	CNS0095594	Slightly white alabastrum(diploid) 3	0.437
	CNS0095595	Whole white alabastrum(diploid) 2	0.913
	CNS0095596	Whole white alabastrum(diploid) 3	0.536
	CNS0095597	Whole white alabastrum(diploid) 4	0.305
	CNS0095598	Silvery flower (diploied) 1	0.015
	CNS0095599	Silvery flower (diploied) 2	0.015
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.056
	CNS0095602	Golden flower (diploid) 2	0.023
	CNS0095603	Golden flower (diploid) 3	0.028
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.988
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.756
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.897
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.436
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.362
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.657
	CRR073298	Stem 2	1.646
	CRR073299	Stem 3	1.994
	CRR073300	Leaf 1	3.886
	CRR073301	Leaf 2	1.583
	CRR073302	Leaf 3	4.023
	CRR073303	Juvenile bud 1	1.897
	CRR073304	Juvenile bud 2	2.411
	CRR073305	Juvenile bud 3	2.971
	CRR073306	Third green 1	1.824
	CRR073307	Third green 2	0.657
	CRR073308	Third green 3	1.058
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.067
	CRR073320	Tawny withering 3	0.141