Gene detail

Detail information of GWHGAAZE030964

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP37270.1	0	hypothetical protein JCGZ_06326 [Jatropha curcas]
COG	NP_276937.1	2E-27	hypothetical protein MTH1831
trEMBL	tr\|A0A067KYE8\|A0A067KYE8_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP37270.1}
TAIR10	AT3G16260.1	0	tRNAse Z4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51044812	51049646	+
GWHAAZE00000009	mRNA	51044812	51049646	+
GWHAAZE00000009	exon	51044812	51044892	+
GWHAAZE00000009	exon	51045921	51046010	+
GWHAAZE00000009	exon	51046223	51046267	+
GWHAAZE00000009	exon	51046396	51046450	+
GWHAAZE00000009	exon	51046613	51046653	+
GWHAAZE00000009	exon	51046734	51047105	+
GWHAAZE00000009	exon	51047196	51047400	+
GWHAAZE00000009	exon	51047505	51047737	+
GWHAAZE00000009	exon	51047993	51048046	+
GWHAAZE00000009	exon	51048145	51048548	+
GWHAAZE00000009	exon	51048652	51049216	+
GWHAAZE00000009	exon	51049332	51049646	+
GWHAAZE00000009	CDS	51044812	51044892	+
GWHAAZE00000009	CDS	51045921	51046010	+
GWHAAZE00000009	CDS	51046223	51046267	+
GWHAAZE00000009	CDS	51046396	51046450	+
GWHAAZE00000009	CDS	51046613	51046653	+
GWHAAZE00000009	CDS	51046734	51047105	+
GWHAAZE00000009	CDS	51047196	51047400	+
GWHAAZE00000009	CDS	51047505	51047737	+
GWHAAZE00000009	CDS	51047993	51048046	+
GWHAAZE00000009	CDS	51048145	51048548	+
GWHAAZE00000009	CDS	51048652	51049216	+
GWHAAZE00000009	CDS	51049332	51049646	+

Transcript Sequence
>GWHTAAZE030998 ATGCGAGAATCCAAGACAAATCAGCGGCGGTTGCATTTGCAGTCAAAAAACAGGGCTTTGGTCGCAGCTCTCTCTGTGCAAATTCTGGGGATTGGCATGGATACTCAAGATACCTCGCCATCTATCTTGCTTTTCTTTGACAAACAAAGATTTATATTTAATGCTGGAGAAGGGTTGCAGCGCTTCTGCATAGAACATAAGATTAAATTGTCTAAGATTGACCACATATTTCTCTCACGTGTCTGCTCAGAAACTGCTGGCGGACTTCCAGGCCTTTTATTGACTTTGGCCGGCATTGGAGAAGGAATGTCTGCCAACATCTGGGGTTCCCCAGATTTAAAGTATTTAGTTGATGCGATGAAATCATTTGTCCCAAATGCTGCTATGGGTCACGCACATTGCTTTGGGCCTCCACCTGTTTCGGATGGAGTTGCTGTGCACAATAGATGGAAGTATGATGATCCTCTTGTTCTTATTGATGATGAAGTTATTAAAATGTCAGCCATTCTCTTGCAACCAAACTGCTCAGAATCGTATATTTCTGTGATATATGTTTTGGAATTACCTGAAATTAAGGGGAAGTTTGATCCAAAAAAAGCTGATGACCTTGGATTGATACCTGGGCCAAAGTATGGTGAACTGCAACTAGGGAATTCAGTGATGTCAGATCGTCACAATATCATGGTTCATCCGAGTGATGTACTAGGTCCTTCTACTCCTGGTCCTATTGCGATCCTTATTGACTGCCCAACGTCATCTCATTTGCAAGAATTGTTGTTGGTAAAATCTCTTCACAGTTATTATGAGGACATGTCTGACAACCAAGAAGGGGGTTCCAAAACTGTGAATTGCGTAATTCACTTAAGTCCTGCATCTTTAGTAAATACAGTAGAAATGTGTATTATCTTCTTCTTTGATTATTCATTCCTACTTGAGTCATTATATAGCATGGAGGGCTCTCGTTATTTTTGCAGGAAGAAGACCGAGGTTCCAATTCTAGAATCTAGTGCAAGAATTGCAGCACGACTTAACTACCTATGTCCTCAGTTCTTTCCAGCTCCAGGTTTTGGGTCTATCCAGAGACCAAAGAGGCCAGCATCAGGTTTAACCGTGTCAAGTGAGCTGGGCACTGTTGAAAAGCATTGTGAACGTGTTTCTGCTGAAAATCTCCTAAAGTTCTATTTGCGTCCTATAGCGCAGCTTGGATTAGACAGATCTAGTATTCCAACAGTATCGGCTCCCTCAGAAATTGTTGACGAGTTACTTTCAGAGATCCCGGAGATTGAAGAAGCTGCCCAACGAGTTGCTTTGCTCTTGCATGGTGGCAACGAAACAAGAGAAGAGATCGCATCTGTTCAAGATAACGAAATTATGAACAAAGATGTACAGTTTGATGAAAATGCACTTCCTAGCTGTCTGAAAGATATAAATAGAGAAAACACGGAGATTGTTTTTCTGGGTACCGGTTCAGCCCAGCCTTCGAAACACCGCAATGTCAGTTCTATCTTCATCAATCTCTTCTCAAAAGGAAGTCTTCTCTTAGATTGTGGCGAAGGAACACTGTCACAGCTGATTAGAAGATTTGGTATGAAGGGTGCTGATGATGCCGTGAGAGGTTTAAGGTTTATTTGGATTTCACATATTCATGGTGATCACCAGATTGGTCTAATTAGATTACTTGCTCAGCGACGCAAATTGTTGAAGGGAACTGCACATGAACCTTTGATAGTTATTGGCCCTTGGCCGCTTAAGAGATTTCTAGACAGTTACATAATTGAGGATCTAGATCTGCTGTTCCTTGATTGCAGACATACCACAGAAGATTCATTGGACGCTTTTCAATCAAACCAACAGCGTTCCACTCCTCAAAGTTCGTCTGATTTTGAGATTATCAATGGATATGCTGGTTCAGAGACCTCGATAAATATTCCAACCCTAAAGAAATTGAAGAAAATACTTGGAGAAGCAGGTTTAGAGGCTTTGATAAGTTTCCCCGTTGTGCATTGTCCACAAGCATTTGGTGTTGCTTTGAAAGCTGCAGATAGAATCAGCACTGTTGGAGAAACAATACCTGGGTGGAAGATTGTGTACTCTGGTGACACTAGGCCCTGCCTTAATATCATCAAAGCATCTCACGGAGCAACGGCAACTTTTGAGGATGGACTGTTGGAGGAAGCTATAGCAAAAAACCACAGCACAACAACGGAAGCTATTGAAGCAGGGGAAGCTGCTGGAGCATATCGCATCATCCTTACCCACTTCAGCCAAAGATACCCTAAGATTCCAGTTTTTGATGAGACTCACATGTATAATACGTGCATAGCATTCGATCTAATGAGTGTCAACTTAGCGGATCTACATGTCCTTCCTAAAGTTCTTCCGTACCTTAAACTCCTTTTCAAAAATGAAATGATTGTTGATGAACCCGATGACGTGATTATTGTAACTGAGATTGATTGA

Network for GWHGAAZE030964

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13691.7	Lactamase_B_4	31	88	2.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00784	rnz	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0008033	biological_process	tRNA processing

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.803
	SRR3591706	second leaf	8.394
	SRR3591707	mature leaf	11.862
	SRR3591708	Shoot apex	14.558
	SRR3591709	Stem	11.566
	SRR3591710	White floral bud	8.751
	SRR3591711	White flower	14.406
	SRR3591712	Green floral bud	8.917
	SRR3591713	Yellow flower	12.881
SRP173429	SRR8316895	Juvenile bud stage	3.412
	SRR8316896	Juvenile bud stage	4.889
	SRR8316897	Juvenile bud stage	2.392
	SRR8316894	Third green stage	2.906
	SRR8316900	Third green stage	6.565
	SRR8316901	Third green stage	6.101
	SRR8316898	Complete white stage	2.096
	SRR8316899	Complete white stage	7.992
	SRR8316903	Complete white stage	4.912
	SRR8316902	Silver flowering stage	3.234
	SRR8316904	Silver flowering stage	4.982
	SRR8316905	Silver flowering stage	2.373
	SRR8316906	Gold flowering stage	9.043
	SRR8316907	Gold flowering stage	7.738
	SRR8316908	Gold flowering stage	14.356
SRP132670	SRR6706286	Control	4.027
	SRR6706287	Light intensity 50%	4.407
	SRR6706288	Light intensity 20%	5.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.107
	CNS0095593	Slightly white alabastrum(diploid) 2	4.804
	CNS0095594	Slightly white alabastrum(diploid) 3	3.573
	CNS0095595	Whole white alabastrum(diploid) 2	3.463
	CNS0095596	Whole white alabastrum(diploid) 3	3.225
	CNS0095597	Whole white alabastrum(diploid) 4	3.117
	CNS0095598	Silvery flower (diploied) 1	7.327
	CNS0095599	Silvery flower (diploied) 2	3.498
	CNS0095600	Silvery flower (diploied) 3	5.696
	CNS0095601	Golden flower (diploid) 1	5.770
	CNS0095602	Golden flower (diploid) 2	4.114
	CNS0095603	Golden flower (diploid) 3	4.956
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.607
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.765
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.008
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.128
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.971
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.440
	CNS0095610	Silvery flower (tetraploid) 1	6.429
	CNS0095611	Silvery flower (tetraploid) 2	6.129
	CNS0095612	Silvery flower (tetraploid) 3	5.070
	CNS0095613	Golden flower (tetraploid) 1	4.959
	CNS0095614	Golden flower (tetraploid) 2	5.370
	CNS0095615	Golden flower (tetraploid) 3	5.969
CRA001975	CRR073297	Stem 1	4.847
	CRR073298	Stem 2	4.334
	CRR073299	Stem 3	1.634
	CRR073300	Leaf 1	5.922
	CRR073301	Leaf 2	4.631
	CRR073302	Leaf 3	2.942
	CRR073303	Juvenile bud 1	2.986
	CRR073304	Juvenile bud 2	1.559
	CRR073305	Juvenile bud 3	2.998
	CRR073306	Third green 1	0.778
	CRR073307	Third green 2	0.208
	CRR073308	Third green 3	0.619
	CRR073309	Second white 1	0.787
	CRR073310	Second white 2	1.216
	CRR073311	Second white 3	1.545
	CRR073312	Silver flowering 1	2.583
	CRR073313	Silver flowering 2	1.490
	CRR073314	Silver flowering 3	1.040
	CRR073315	Gold flowering 1	1.995
	CRR073316	Gold flowering 2	5.566
	CRR073317	Gold flowering 3	0.762
	CRR073318	Tawny withering 1	4.177
	CRR073319	Tawny withering 2	4.090
	CRR073320	Tawny withering 3	4.050