Detail information of GWHGAAZE030969


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011072417.10PREDICTED: nuclear pore complex protein NUP35 [Sesamum indicum]
Swissprottr|O04326|NUP35_ARATH7E-152Nuclear pore complex protein NUP35 {ECO:0000303|PubMed:21189294}
trEMBLtr|A0A068TPY0|A0A068TPY0_COFCA2E-177Nuclear pore complex protein NUP35 {ECO:0000256|PIRNR:PIRNR038119}
TAIR10AT3G16310.19E-110mitotic phosphoprotein N' end (MPPN) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5113243951135758-
GWHAAZE00000009mRNA5113243951135758-
GWHAAZE00000009exon5113516051135758-
GWHAAZE00000009exon5113292351133034-
GWHAAZE00000009exon5113243951132753-
GWHAAZE00000009CDS5113516051135758-
GWHAAZE00000009CDS5113292351133034-
GWHAAZE00000009CDS5113243951132753-
Transcript Sequence

Network for GWHGAAZE030969

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05172.14Nup35_RRM1892747.70E-26
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14313NUP35, NUP53 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006913biological_processnucleocytoplasmic transport
GO:0031965cellular_componentnuclear membrane
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.668
SRR3591706second leaf4.884
SRR3591707mature leaf5.056
SRR3591708Shoot apex9.249
SRR3591709Stem6.390
SRR3591710White floral bud8.641
SRR3591711White flower12.305
SRR3591712Green floral bud12.616
SRR3591713Yellow flower9.828
SRP173429 SRR8316895Juvenile bud stage 6.575
SRR8316896Juvenile bud stage 8.387
SRR8316897Juvenile bud stage 5.163
SRR8316894Third green stage 2.720
SRR8316900Third green stage 12.503
SRR8316901Third green stage 13.662
SRR8316898Complete white stage 3.717
SRR8316899Complete white stage 20.352
SRR8316903Complete white stage 5.344
SRR8316902Silver flowering stage4.786
SRR8316904Silver flowering stage4.409
SRR8316905Silver flowering stage1.931
SRR8316906Gold flowering stage 10.952
SRR8316907Gold flowering stage 9.008
SRR8316908Gold flowering stage 13.315
SRP132670SRR6706286Control14.051
SRR6706287Light intensity 50%12.620
SRR6706288Light intensity 20%14.224
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.147
CNS0095593Slightly white alabastrum(diploid) 28.148
CNS0095594Slightly white alabastrum(diploid) 37.824
CNS0095595Whole white alabastrum(diploid) 26.356
CNS0095596Whole white alabastrum(diploid) 37.319
CNS0095597Whole white alabastrum(diploid) 45.148
CNS0095598Silvery flower (diploied) 14.271
CNS0095599Silvery flower (diploied) 24.494
CNS0095600Silvery flower (diploied) 37.562
CNS0095601Golden flower (diploid) 15.634
CNS0095602Golden flower (diploid) 24.996
CNS0095603Golden flower (diploid) 35.405
CNS0095604Slightly white alabastrum(tetraploid) 18.320
CNS0095605Slightly white alabastrum(tetraploid) 25.688
CNS0095606Slightly white alabastrum(tetraploid) 316.128
CNS0095607Whole white alabastrum(tetraploid) 15.034
CNS0095608Whole white alabastrum(tetraploid) 25.007
CNS0095609Whole white alabastrum(tetraploid) 315.181
CNS0095610Silvery flower (tetraploid) 112.555
CNS0095611Silvery flower (tetraploid) 211.130
CNS0095612Silvery flower (tetraploid) 37.874
CNS0095613Golden flower (tetraploid) 17.690
CNS0095614Golden flower (tetraploid) 29.365
CNS0095615Golden flower (tetraploid) 37.618
CRA001975CRR073297Stem 18.306
CRR073298Stem 210.049
CRR073299Stem 311.194
CRR073300Leaf 19.732
CRR073301Leaf 212.498
CRR073302Leaf 312.390
CRR073303Juvenile bud 113.115
CRR073304Juvenile bud 210.163
CRR073305Juvenile bud 313.430
CRR073306Third green 13.738
CRR073307Third green 24.214
CRR073308Third green 33.607
CRR073309Second white 17.255
CRR073310Second white 27.890
CRR073311Second white 35.296
CRR073312Silver flowering 13.390
CRR073313Silver flowering 23.819
CRR073314Silver flowering 32.948
CRR073315Gold flowering 15.383
CRR073316Gold flowering 24.978
CRR073317Gold flowering 35.796
CRR073318Tawny withering 110.707
CRR073319Tawny withering 28.370
CRR073320Tawny withering 314.234