Gene detail

Detail information of GWHGAAZE030971

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002284003.2	PREDICTED: homeobox-leucine zipper protein ATHB-15 [Vitis vinifera]
Swissprot	tr\|Q9ZU11\|ATB15_ARATH	Homeobox-leucine zipper protein ATHB-15
trEMBL	tr\|F6HYB4\|F6HYB4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59437.1}
TAIR10	AT1G52150.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51171877	51178613	+
GWHAAZE00000009	mRNA	51171877	51178613	+
GWHAAZE00000009	exon	51171877	51172085	+
GWHAAZE00000009	exon	51172381	51172504	+
GWHAAZE00000009	exon	51172695	51172798	+
GWHAAZE00000009	exon	51172911	51173001	+
GWHAAZE00000009	exon	51173649	51173744	+
GWHAAZE00000009	exon	51173847	51173960	+
GWHAAZE00000009	exon	51174048	51174131	+
GWHAAZE00000009	exon	51174256	51174411	+
GWHAAZE00000009	exon	51174502	51174576	+
GWHAAZE00000009	exon	51174669	51174775	+
GWHAAZE00000009	exon	51174869	51175061	+
GWHAAZE00000009	exon	51175736	51175882	+
GWHAAZE00000009	exon	51176022	51176102	+
GWHAAZE00000009	exon	51176878	51177012	+
GWHAAZE00000009	exon	51177188	51177547	+
GWHAAZE00000009	exon	51177838	51178029	+
GWHAAZE00000009	exon	51178113	51178319	+
GWHAAZE00000009	exon	51178467	51178613	+
GWHAAZE00000009	CDS	51171877	51172085	+
GWHAAZE00000009	CDS	51172381	51172504	+
GWHAAZE00000009	CDS	51172695	51172798	+
GWHAAZE00000009	CDS	51172911	51173001	+
GWHAAZE00000009	CDS	51173649	51173744	+
GWHAAZE00000009	CDS	51173847	51173960	+
GWHAAZE00000009	CDS	51174048	51174131	+
GWHAAZE00000009	CDS	51174256	51174411	+
GWHAAZE00000009	CDS	51174502	51174576	+
GWHAAZE00000009	CDS	51174669	51174775	+
GWHAAZE00000009	CDS	51174869	51175061	+
GWHAAZE00000009	CDS	51175736	51175882	+
GWHAAZE00000009	CDS	51176022	51176102	+
GWHAAZE00000009	CDS	51176878	51177012	+
GWHAAZE00000009	CDS	51177188	51177547	+
GWHAAZE00000009	CDS	51177838	51178029	+
GWHAAZE00000009	CDS	51178113	51178319	+
GWHAAZE00000009	CDS	51178467	51178613	+

Transcript Sequence
>GWHTAAZE031005 ATGATGGCAATGTCCTGCAAGGATGGTAAGGGAGTGATGGACAATGGCAAGTATGTCCGCTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTCTATCACGACTGCCCTAAACCCAGTTCTATTCGAAGGCAACAGCTCATTAGGGAATGCCCTATTCTCTCCAACATCGAGCCCAAACAAATCAAAGTTTGGTTCCAAAATCGAAGATGCAGGGAAAAACAGAGAAAAGAGGCTTCACGACTTCAAGCTGTGAATAGGAAACTGACTGCCATGAATAAGCTTTTAATGGAAGAAAATGATAGGTTGCAGAAGCAGGTGTCACACCTTGGTACTACGCTTCCGACCAAAGACACTAGTTGTGAGTCAGTGGTGACAAGTGGTCAACACCATTTGACGCCTCAGCAGCATCCGCCTAGAGATGCTAGTCCTGCAGGGCTATTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGGACCGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGAGCCTGCGGCCTGGTGGGTCTAGAGCCTACTAGGGTTGCAGAGATCCTCAAGGATAGGCCTTCATGGTTTCGTGATTGCCGAGCTGTGGATGTCCTCAACGTGCTACCCACTGCCAATGGTGGAACCATTGAACTTTTGTACATGCAGCTATATGCGCCAACAACTTTGGCGCCTGCTCGTGACTTTTGGTTGCTACGCTATACTTCTGTTATGGAGGATGGCAGTCTAGTGGTCTGTGAAAGATCACTTAGCAACACTCAAAATGGTCCGAGCATGCCAGCAGTGCAGAATTTTGTGAGAGCCGAAATGCTACCCAGTGGGTACCTGATTAGACCTTGTGAGGGAGGCGGCTCAATAATCCACATTGTTGATCACATGAATTTGGAGGCATGGAGTGTGCCTGAAGTACTACGCCCCTTGTATGAATCGTCAACAGTGCTTGCTCAAAAGACTACAATGATGGCTTTACGCCAGTTGAGGCAAGTAGCTCAGGAGGTTTCTCAGTCTAGCGTCTCCAACTGGGGTCGGAGACCTGCAGCTCTCCGAGCACTTAGCCAGAGATTGAGCAGGGGTTTTAATGAGGCTCTTAATGGATTCACTGATGAGGGGTGGTCGCTGATGGGAACTGATGGCATGGATGATGTTACCATCCTTGTGAATTCTTCTCCTGACAAACTAATGGGTCTAAATCTCTCCTTTGCAAATGGATTTCCATCTGTCAGCAATGCTGTCTTGTGTGCAAAAGCTTCAATGCTTTTACAGAATGTGCCTCCTGCAATACTTCTTAGGTTCCTGCGGGAACACAGGTCAGAATGGGCAGACAACAATATTGATGCTTACTCAGCTGCGGCTATTAAAGTTGGTCCCTGTACCTTACCAGGGTCCCGAGTTGGAAATTTCGGGGGTCAACTGCTTGAGGTTATTAAGTTGGAAGGTGTTGGCAATTGTCCTGAAGATGCAATCATGCCTAGAGATATGTTTCTCCTGCAACTATGCAGTGGAATGGATGAAAATGCGGTTGGGACGTGTGCTGAGCTCATATTTGCTCCCATTGACGCCTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCGGGAAAGGAAGCCTCAAGTCCAAATCGCACCCTAGATCTTGCTTCTGCTCTTGAGATTGGGCCAGCAGGAAATAAGGCATCAAGTGATTATACTGTTCCTAGTGGCAGTTCAAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAGAGCCACATGCAGGAAAGTGTTGCTTCGATGGCCAGGCAATATGTCCGTAGTATTATATCATCAGTTCAGAGAGTGGCATTAGCACTATCTCCTTCTAACCTGAATTCAAATGGTGGTCTTCGGCCACCACTCGGAACTCCTGAAGCACATACGCTTGCTAGGTGGATCTGCCACAGTTACAGGTGCGTCACTTCACCTCTTCTTGGCAATATATTGGTGCTATTTGGGGTCGAGCTACTTAAATCTGGCGGTGAAGGCAGTGAATCTGTCCTGAAAACGTTGTGGCACCACTCGGATGCTATTATGTGCTGCTCTTTAAAGGCAAGTGATTTAATTTTTTCACCTCCATCTTTTGCATTAGGGTCTTGCATTGTCTTTCCTCTATTGCTTTGGAAAAACACCTATGATATTAGCACATTAGCCCAACCATGTGCACGTGCGCTGACTAATTTGCAATTCATGCAGGCATTACCAGTTTTCACCTTTGCAAACCAGGCTGGACTTGACATGCTGGAGACCACGTTTGTTGCACTCCAAGATATAACATTGGAAAAAATCTTTGATGATCATGGAAGAAAAAGTCTCTGCTCTGAGTTCCCTCAGATAATGCAACAGGGTTTTGCTTGTCTTCAAGGTGGGATCTGTTTGTCAAGCATGGGGAGGCCAGTTTCTTATGAGAGAGCGGTAGCTTGGAAAGTGTTGAATGAAGAAGAGAATGCCCACTGCATTTGCTTTATGTTTATGAATTGGTCATTTGTTTGA

Network for GWHGAAZE030971

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	17	75	3.40E-16
PF01852.20	START	150	357	4.70E-53
PF08670.12	MEKHLA	671	730	4.80E-06
PF08670.12	MEKHLA	774	872	8.00E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008289	molecular_function	lipid binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	131.989
	SRR3591706	second leaf	17.179
	SRR3591707	mature leaf	16.583
	SRR3591708	Shoot apex	61.090
	SRR3591709	Stem	175.669
	SRR3591710	White floral bud	34.705
	SRR3591711	White flower	32.556
	SRR3591712	Green floral bud	20.963
	SRR3591713	Yellow flower	23.598
SRP173429	SRR8316895	Juvenile bud stage	20.287
	SRR8316896	Juvenile bud stage	25.758
	SRR8316897	Juvenile bud stage	12.972
	SRR8316894	Third green stage	11.748
	SRR8316900	Third green stage	25.360
	SRR8316901	Third green stage	28.538
	SRR8316898	Complete white stage	10.904
	SRR8316899	Complete white stage	39.994
	SRR8316903	Complete white stage	21.236
	SRR8316902	Silver flowering stage	10.598
	SRR8316904	Silver flowering stage	14.324
	SRR8316905	Silver flowering stage	6.323
	SRR8316906	Gold flowering stage	17.620
	SRR8316907	Gold flowering stage	16.694
	SRR8316908	Gold flowering stage	17.590
SRP132670	SRR6706286	Control	22.223
	SRR6706287	Light intensity 50%	26.224
	SRR6706288	Light intensity 20%	27.388
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.406
	CNS0095593	Slightly white alabastrum(diploid) 2	23.575
	CNS0095594	Slightly white alabastrum(diploid) 3	21.214
	CNS0095595	Whole white alabastrum(diploid) 2	18.650
	CNS0095596	Whole white alabastrum(diploid) 3	12.626
	CNS0095597	Whole white alabastrum(diploid) 4	16.214
	CNS0095598	Silvery flower (diploied) 1	29.587
	CNS0095599	Silvery flower (diploied) 2	21.881
	CNS0095600	Silvery flower (diploied) 3	14.929
	CNS0095601	Golden flower (diploid) 1	21.101
	CNS0095602	Golden flower (diploid) 2	16.348
	CNS0095603	Golden flower (diploid) 3	15.605
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.819
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.332
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.563
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.497
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.575
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.026
	CNS0095610	Silvery flower (tetraploid) 1	18.950
	CNS0095611	Silvery flower (tetraploid) 2	15.282
	CNS0095612	Silvery flower (tetraploid) 3	16.615
	CNS0095613	Golden flower (tetraploid) 1	12.273
	CNS0095614	Golden flower (tetraploid) 2	16.634
	CNS0095615	Golden flower (tetraploid) 3	12.117
CRA001975	CRR073297	Stem 1	30.495
	CRR073298	Stem 2	26.240
	CRR073299	Stem 3	12.457
	CRR073300	Leaf 1	30.407
	CRR073301	Leaf 2	33.217
	CRR073302	Leaf 3	9.823
	CRR073303	Juvenile bud 1	9.920
	CRR073304	Juvenile bud 2	3.990
	CRR073305	Juvenile bud 3	11.745
	CRR073306	Third green 1	2.746
	CRR073307	Third green 2	1.563
	CRR073308	Third green 3	2.710
	CRR073309	Second white 1	1.497
	CRR073310	Second white 2	2.462
	CRR073311	Second white 3	2.714
	CRR073312	Silver flowering 1	2.330
	CRR073313	Silver flowering 2	1.090
	CRR073314	Silver flowering 3	1.272
	CRR073315	Gold flowering 1	3.702
	CRR073316	Gold flowering 2	8.046
	CRR073317	Gold flowering 3	3.450
	CRR073318	Tawny withering 1	60.140
	CRR073319	Tawny withering 2	56.939
	CRR073320	Tawny withering 3	83.706