Gene detail

Detail information of GWHGAAZE030976

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97975.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TNR1\|A0A068TNR1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO97975.1}
TAIR10	AT1G79730.1	8E-128	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51267731	51274360	+
GWHAAZE00000009	mRNA	51267731	51274360	+
GWHAAZE00000009	exon	51267731	51268653	+
GWHAAZE00000009	exon	51268940	51269008	+
GWHAAZE00000009	exon	51271456	51271555	+
GWHAAZE00000009	exon	51271661	51271876	+
GWHAAZE00000009	exon	51271970	51272043	+
GWHAAZE00000009	exon	51272146	51272265	+
GWHAAZE00000009	exon	51272366	51272443	+
GWHAAZE00000009	exon	51272591	51272696	+
GWHAAZE00000009	exon	51272858	51272944	+
GWHAAZE00000009	exon	51273076	51273144	+
GWHAAZE00000009	exon	51273629	51273700	+
GWHAAZE00000009	exon	51273969	51274112	+
GWHAAZE00000009	exon	51274217	51274360	+
GWHAAZE00000009	CDS	51267731	51268653	+
GWHAAZE00000009	CDS	51268940	51269008	+
GWHAAZE00000009	CDS	51271456	51271555	+
GWHAAZE00000009	CDS	51271661	51271876	+
GWHAAZE00000009	CDS	51271970	51272043	+
GWHAAZE00000009	CDS	51272146	51272265	+
GWHAAZE00000009	CDS	51272366	51272443	+
GWHAAZE00000009	CDS	51272591	51272696	+
GWHAAZE00000009	CDS	51272858	51272944	+
GWHAAZE00000009	CDS	51273076	51273144	+
GWHAAZE00000009	CDS	51273629	51273700	+
GWHAAZE00000009	CDS	51273969	51274112	+
GWHAAZE00000009	CDS	51274217	51274360	+

Transcript Sequence
>GWHTAAZE031010 ATGGCATCGTACAGGCCATTCCCTCCACCTCCTCAATCGACTTTTGCTACTCCCCCCAACCAAAACCCTATTCAGCCTCTACCACCACCCCCACAAACAAGAGGAGGAACAAGTCAGTATACCCAAAACTGGGCTGGTGGTTACAGTGGTAGTGGTGGTGATGCAGCTCCTTCTCTTTCCCAGAATTATAATAATAATAATAATAATAACCAGATGCTCCCAGGTTATGGGGCTCCTTCTAGAAATCAAATTCCTCGTCCACCTATTGCCCCACCCCATCATCAACAGCAACCACAGTATCCCTATCCACCCCCACTACCTCCAGCTGATTCCTCATATCCACCACCCCCTCCACCTTCTTCCATCTCCAAATTACCATCAGCTCCTATGTATTATCCTTCTTCTCAGTTCTCACAATTCAATCAACACCCACCTTTGCAGCCATTGCAACCGCCGCCGCCTCCACCTCCTTCTTCGCCCCCGAATTCTTCTATTCCTCCACCTCCACCCCCACCATCACCACCACCACCTCCTCTTTCAATACCTGCAGCTATTCAAAGCAAAGAAAGTAAACCCGCTGCTGACAGAATGGCTCCCGGTTATTCCAGTCAAGGGGCTCTCCCCAAACAGATTAAGCCTTCTTTTCCCCCAGTGCCACCAAGGAAAATTGAGACAGAAGAAGAGAGAAGGTTGCGCAAGAAGAGAGAATTGGAGAGACAAAGGCAGGAAGAGAAGCTTAGGATGCAATTGAAGCAGTCGCAAGGCAAAGTGCTACAAAAGACCCAAATGTTATCTTCTGGAATAAAAGGGCATGGCTCAATTAGCGGGTCACACATGGGTGAGAGGAGGACTAATACACTGCTGAGTGGAGAGAGAACTGAAAACCGCTTGAAGAAGCCAACGACCTTTCTTTGCAAGTTGAGATTCCGTAATGAGCTACCAGATTCAGCAGGACAACCAAAACTCTTGTCCTCGGGGAGAGACAAAGATCGATACACAAAATACAACATCACATCACTGGAAAAAATACACAAACCTCGACTTTATGTCGAGTCAGACCTTGGGATACCGCTTGACCTACTTGATCTCAGTTCTAATTTCTTCTCTTTGGTCCCCTTGACTAGCCCTCCTAAGGGTGATAGGTTAGTACTTGATCCGGAAGATGAGGAATTATTGCGTGAAGATGTTGCCTTGACCCCAGTAAAGAAAGATGGCTTAAAACGAAAGGAGCGTCCTACTGATCAAGGCTTTTCTTGGCTCGTCAAAACTCAGTATATTTCTCCCCTCAGCACCGAAGCAACAAAGCAGGCTCTTACTGACAAACAAGCGAAAGAACTGCGAGAAAAGCGAGGAGGCCGTATCCTAGAGAATTTCAATAACAGGGAAAGGAAAATCAAGGAAATTGAGGCTTCATTTGAGGCATGTAAATCGTTGCCTGTTCATGCAACCAACAAAAAACTGCAGCCTGTCGAGGTTCTGCCCCTATTACCTGATTTCGAACGCGTTTCATTTGACAAGGGTACTAATTTGAAAGTAGTAAATTGGTATATGGTTAATAGGAGTCTGGGTAAGGCTGACTGGTATGACGACCAGTTTGTCATCGCAACCTTTGATAATGCTCCTACTGCTGATTCAGAATTATATGGCAAGTTGGAAAAAACTGTTCGTGATGCCCATGAATCTCAGGCCATAATGAAAAGCTACGTATCAACATCTTCAGATTCAGCTAAGCCAGACAAATTTCTGGCATACATGGTTCCTTCACCGGATGAGCTATCAAAGGATATCTATGATGAACATGAAGATGTCTCATACACTTGGGTTCGTGAGTATCATTATGATGTTCGGGGCGATGATGCAGATGATCCCACAACATACCTTGTGGCATTCGGTGAATCAGAGGCACGCTACACGCCTCTTCCGACAAAGCTTATTTTGAGGAAAAAGAGGGCCAAGGAAGGAAGGTCCAGCAATGAAATTGAACATTATCCTGCACCGTCAAGGGTCACTGTAAGGCGGAGATCAACTGTCTCTGCTATAGAATTGAAGGAGCCTGAGGTTTACTCTGGAAGGAAGGGTACTGTTTCAAATTCTAGAAGTGGACGGGCAGACATGGACGAGGGCCATGGTCGACAGCAGAAGGTGGTACAAGACACCGAAATGGATCAATCTAGTGGCGGAGAATATGAAATTTCTGATTAA

Network for GWHGAAZE030976

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03985.14	Paf1	303	502	7.80E-35
PF03985.14	Paf1	528	674	3.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15174	PAF1	MAPK signaling pathway - yeast	map04011

Gene Ontology

GO term	Ontology	Name
GO:0006368	biological_process	transcription elongation from RNA polymerase II promoter
GO:0016570	biological_process	histone modification
GO:0016593	cellular_component	Cdc73/Paf1 complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.390
	SRR3591706	second leaf	18.045
	SRR3591707	mature leaf	24.059
	SRR3591708	Shoot apex	27.891
	SRR3591709	Stem	32.469
	SRR3591710	White floral bud	48.009
	SRR3591711	White flower	55.065
	SRR3591712	Green floral bud	33.428
	SRR3591713	Yellow flower	42.166
SRP173429	SRR8316895	Juvenile bud stage	15.730
	SRR8316896	Juvenile bud stage	28.346
	SRR8316897	Juvenile bud stage	13.644
	SRR8316894	Third green stage	12.560
	SRR8316900	Third green stage	30.978
	SRR8316901	Third green stage	30.450
	SRR8316898	Complete white stage	9.780
	SRR8316899	Complete white stage	28.719
	SRR8316903	Complete white stage	34.108
	SRR8316902	Silver flowering stage	22.755
	SRR8316904	Silver flowering stage	29.995
	SRR8316905	Silver flowering stage	14.396
	SRR8316906	Gold flowering stage	39.908
	SRR8316907	Gold flowering stage	43.612
	SRR8316908	Gold flowering stage	42.229
SRP132670	SRR6706286	Control	32.704
	SRR6706287	Light intensity 50%	33.875
	SRR6706288	Light intensity 20%	31.219
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.798
	CNS0095593	Slightly white alabastrum(diploid) 2	17.974
	CNS0095594	Slightly white alabastrum(diploid) 3	16.904
	CNS0095595	Whole white alabastrum(diploid) 2	16.687
	CNS0095596	Whole white alabastrum(diploid) 3	15.339
	CNS0095597	Whole white alabastrum(diploid) 4	16.990
	CNS0095598	Silvery flower (diploied) 1	24.100
	CNS0095599	Silvery flower (diploied) 2	19.655
	CNS0095600	Silvery flower (diploied) 3	41.558
	CNS0095601	Golden flower (diploid) 1	23.913
	CNS0095602	Golden flower (diploid) 2	37.177
	CNS0095603	Golden flower (diploid) 3	35.012
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.061
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.841
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.050
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.716
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.592
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.810
	CNS0095610	Silvery flower (tetraploid) 1	46.015
	CNS0095611	Silvery flower (tetraploid) 2	41.081
	CNS0095612	Silvery flower (tetraploid) 3	53.077
	CNS0095613	Golden flower (tetraploid) 1	29.621
	CNS0095614	Golden flower (tetraploid) 2	40.180
	CNS0095615	Golden flower (tetraploid) 3	38.061
CRA001975	CRR073297	Stem 1	28.657
	CRR073298	Stem 2	26.628
	CRR073299	Stem 3	20.899
	CRR073300	Leaf 1	30.723
	CRR073301	Leaf 2	30.266
	CRR073302	Leaf 3	19.303
	CRR073303	Juvenile bud 1	23.146
	CRR073304	Juvenile bud 2	19.038
	CRR073305	Juvenile bud 3	36.642
	CRR073306	Third green 1	28.311
	CRR073307	Third green 2	23.605
	CRR073308	Third green 3	27.614
	CRR073309	Second white 1	27.066
	CRR073310	Second white 2	33.234
	CRR073311	Second white 3	33.368
	CRR073312	Silver flowering 1	28.540
	CRR073313	Silver flowering 2	30.172
	CRR073314	Silver flowering 3	28.399
	CRR073315	Gold flowering 1	13.518
	CRR073316	Gold flowering 2	21.016
	CRR073317	Gold flowering 3	10.553
	CRR073318	Tawny withering 1	19.615
	CRR073319	Tawny withering 2	20.834
	CRR073320	Tawny withering 3	22.137