Gene detail

Detail information of GWHGAAZE030981

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283588.2	3.0969E-123	PREDICTED: auxin-responsive protein IAA26-like isoform X2 [Vitis vinifera]
Swissprot	tr\|O24408\|IAA18_ARATH	6E-59	Auxin-responsive protein IAA18
trEMBL	tr\|F6HY95\|F6HY95_VITVI	1E-117	Auxin-responsive protein {ECO:0000256\|RuleBase:RU004549}
TAIR10	AT1G51950.1	1E-49	indole-3-acetic acid inducible 18

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51372555	51375334	+
GWHAAZE00000009	mRNA	51372555	51375334	+
GWHAAZE00000009	exon	51372555	51373069	+
GWHAAZE00000009	exon	51374236	51374474	+
GWHAAZE00000009	exon	51374653	51374797	+
GWHAAZE00000009	exon	51375090	51375154	+
GWHAAZE00000009	exon	51375303	51375334	+
GWHAAZE00000009	CDS	51372555	51373069	+
GWHAAZE00000009	CDS	51374236	51374474	+
GWHAAZE00000009	CDS	51374653	51374797	+
GWHAAZE00000009	CDS	51375090	51375154	+
GWHAAZE00000009	CDS	51375303	51375334	+

Transcript Sequence
>GWHTAAZE031015 ATGGAGGGGTATTCAAGGAATGACGAAATCCATCCTCAGTGGCTAGATTTGATTCCCAAAGATAGAGAATGGACTGCAAAAATAGGTGAAGAAAGAAACCATGGGATTATTTCTGAGGAAAAGAAGTTAGAGCTAAGGCTTGGTCCACCAGGTGATGATGAAGAAGAAGTTTGGACCATTGAAAACAATAATATTGGTACCAAAAACAGCTTCATTGAAAGAGATCACCACTCCCTTCTCTATCTTGGCTACTTCTCTAAAATGGCCAATAACACTTTAGGTTCAAAGAGAGGGTTTCTTGATACCCAAGCCCATGGCCAAAAAACTTCTTCGGTTTTCCCGGGAAACAAACAGCAACAAATACAGGTTCCATCATATCTTAGCTCGCCTGTGACGGGGAAGGAATCCTCACAGCCCTGTTGCAATAAACTAGTAGTAGAGTTGCAGAGTGCTGAAAAGAAGACATTTTCACCAGACTCTGCAAATACAGCTGTGACCAACACTTCTCAGAAAAGGAAGAATCTTGCGAGTAGCGGCTCTTCTAAACTGCTCCCCGAGTCACCAAATGTGGTCCCATTCCCAAAAAATGCTGCTGCAATCGAAAAACAGCAGGTGGAAAGTAGCCGTAAAGTTTTGTTTGTGAAGATCAATATGGATGGAGTCCCCATTGGAAGAAAAGTTGATCTTAAAGCTTATGACAGCTATGAAAAGCTCTCCTCTGCTGTTGATCAACTCTTCAGAGGACTTCTTGCAGCTCAAAGGGATTCCTCTGCAGGTGGAATCCAGAATAGGGAAGGAGAGAAAGCAATTACGGGATTATTGGATGGAAGTGGGGAATATACATTGGTGTATGAGGATAATGAAGGAGACCGAATGCTTGTTGGGGATGTCCCTTGGCACATGTTTGTGTCTACAGTGAAGAGGCTGCGCGTGTTGAAAAGCTCCGAGCTGGCCAAACTTTTTGTTGGTAGTAAGCAAGAAAAGAACCCACTTTGA

Network for GWHGAAZE030981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02309.17	AUX_IAA	43	320	4.30E-57

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	pathway	mapID
K14484	IAA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.171
	SRR3591706	second leaf	14.469
	SRR3591707	mature leaf	5.991
	SRR3591708	Shoot apex	42.410
	SRR3591709	Stem	41.926
	SRR3591710	White floral bud	68.787
	SRR3591711	White flower	51.248
	SRR3591712	Green floral bud	20.792
	SRR3591713	Yellow flower	26.426
SRP173429	SRR8316895	Juvenile bud stage	22.858
	SRR8316896	Juvenile bud stage	36.591
	SRR8316897	Juvenile bud stage	10.002
	SRR8316894	Third green stage	16.847
	SRR8316900	Third green stage	25.436
	SRR8316901	Third green stage	28.168
	SRR8316898	Complete white stage	16.295
	SRR8316899	Complete white stage	55.339
	SRR8316903	Complete white stage	45.259
	SRR8316902	Silver flowering stage	26.706
	SRR8316904	Silver flowering stage	26.670
	SRR8316905	Silver flowering stage	6.160
	SRR8316906	Gold flowering stage	17.550
	SRR8316907	Gold flowering stage	38.722
	SRR8316908	Gold flowering stage	22.232
SRP132670	SRR6706286	Control	25.290
	SRR6706287	Light intensity 50%	20.847
	SRR6706288	Light intensity 20%	17.845
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.281
	CNS0095593	Slightly white alabastrum(diploid) 2	35.368
	CNS0095594	Slightly white alabastrum(diploid) 3	27.826
	CNS0095595	Whole white alabastrum(diploid) 2	21.773
	CNS0095596	Whole white alabastrum(diploid) 3	13.063
	CNS0095597	Whole white alabastrum(diploid) 4	20.133
	CNS0095598	Silvery flower (diploied) 1	70.264
	CNS0095599	Silvery flower (diploied) 2	33.884
	CNS0095600	Silvery flower (diploied) 3	29.230
	CNS0095601	Golden flower (diploid) 1	53.878
	CNS0095602	Golden flower (diploid) 2	52.727
	CNS0095603	Golden flower (diploid) 3	53.279
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.143
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.729
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.054
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.877
	CNS0095610	Silvery flower (tetraploid) 1	29.237
	CNS0095611	Silvery flower (tetraploid) 2	25.438
	CNS0095612	Silvery flower (tetraploid) 3	10.368
	CNS0095613	Golden flower (tetraploid) 1	9.488
	CNS0095614	Golden flower (tetraploid) 2	24.293
	CNS0095615	Golden flower (tetraploid) 3	66.233
CRA001975	CRR073297	Stem 1	46.441
	CRR073298	Stem 2	46.270
	CRR073299	Stem 3	49.794
	CRR073300	Leaf 1	32.727
	CRR073301	Leaf 2	35.009
	CRR073302	Leaf 3	21.099
	CRR073303	Juvenile bud 1	17.243
	CRR073304	Juvenile bud 2	6.714
	CRR073305	Juvenile bud 3	33.126
	CRR073306	Third green 1	1.001
	CRR073307	Third green 2	3.208
	CRR073308	Third green 3	5.584
	CRR073309	Second white 1	12.336
	CRR073310	Second white 2	16.379
	CRR073311	Second white 3	15.194
	CRR073312	Silver flowering 1	26.714
	CRR073313	Silver flowering 2	19.050
	CRR073314	Silver flowering 3	19.108
	CRR073315	Gold flowering 1	1.857
	CRR073316	Gold flowering 2	3.981
	CRR073317	Gold flowering 3	2.466
	CRR073318	Tawny withering 1	22.106
	CRR073319	Tawny withering 2	24.371
	CRR073320	Tawny withering 3	23.563