Gene detail

Detail information of GWHGAAZE030994

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008221002.1	6.8056E-153	PREDICTED: inositol oxygenase 1-like isoform X2 [Prunus mume]
Swissprot	tr\|Q8L799\|MIOX1_ARATH	3E-143	Inositol oxygenase 1
trEMBL	tr\|W9R6F3\|W9R6F3_9ROSA	5E-153	Inositol oxygenase 1 {ECO:0000313\|EMBL:EXB74611.1}
TAIR10	AT1G14520.1	3E-112	myo-inositol oxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51514139	51517921	+
GWHAAZE00000009	mRNA	51514139	51517921	+
GWHAAZE00000009	exon	51514139	51514281	+
GWHAAZE00000009	exon	51514942	51515023	+
GWHAAZE00000009	exon	51515155	51515248	+
GWHAAZE00000009	exon	51516617	51516676	+
GWHAAZE00000009	exon	51516778	51516830	+
GWHAAZE00000009	exon	51516937	51517059	+
GWHAAZE00000009	exon	51517175	51517244	+
GWHAAZE00000009	exon	51517356	51517434	+
GWHAAZE00000009	exon	51517691	51517772	+
GWHAAZE00000009	exon	51517895	51517921	+
GWHAAZE00000009	CDS	51514139	51514281	+
GWHAAZE00000009	CDS	51514942	51515023	+
GWHAAZE00000009	CDS	51515155	51515248	+
GWHAAZE00000009	CDS	51516617	51516676	+
GWHAAZE00000009	CDS	51516778	51516830	+
GWHAAZE00000009	CDS	51516937	51517059	+
GWHAAZE00000009	CDS	51517175	51517244	+
GWHAAZE00000009	CDS	51517356	51517434	+
GWHAAZE00000009	CDS	51517691	51517772	+
GWHAAZE00000009	CDS	51517895	51517921	+

Transcript Sequence
>GWHTAAZE031028 ATGCATGTGCAAAATTTTGTGGTTAAAACAGGAGTTCAACCGGAGGAGGTGAAGATCCCCAACAACAACGAGGAGGAAGAAGAATTGGTGTTGGATGGTGGATTTTCTGTTCCCGATATCAATTCATTTGGCCACAACTTTAGGGATTATGATGTGGAAAGTGAGAGGCAAGAGGGTGTAAAGAATTTTTACCGCCTCAATCACATTAGCCAATCTTTTGATTTTGTGAAGCGAATGAGAGAAGAGTATGGGAAATTGGACAAGGTGGAAATGAGCATATGGGAATGCTGTGAACTGCTGAATGAGGTGGTGGATGAGAATCTGGGAAAAGTTCTGCTTCTGCCTAGCTTTGGAGAGCTTCCTCAATGGGCTGTTGTTGGGGACACCTACCCAGTTGGATGTGCTTTTGACGAATCAATTGTTCATCACAAGTACTTTAAAGAAAATCCAGACTATAACAACCCTGCTTACAATACAAAATACGGAGCTTATTCTAAAGGCTGTGGACTTAACAATGTCTTGATGTCATGGGGCCATGATGACTACATGTATTTGGTGGCCAAGGAGAATGGGACAACCCTACCATCAGCTGGTCTTTTCATCATCAGATACCACTCATTTTACGCTTTGCATAGGTCTGGAGCATATAAGCATCTAATGAATGAGGAAGACTTTGATAATCTCAAGTGGCTCCAAGTATTCAACAAGTATGACCTATACAGCAAGAGCAAGGTTAGAGTTAATGTTGAAAGGGTCAAGCCGTACTATCAATCCCTCATTGACAAGTATTTCCCTGAGAAGCTAAGATGGTGA

Network for GWHGAAZE030994

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05153.16	MIOX	58	106	6.70E-12
PF05153.16	MIOX	107	270	9.30E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00469	MIOX	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Inositol phosphate metabolism	map00562

Gene Ontology

GO term	Ontology	Name
GO:0019310	biological_process	inositol catabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005737	cellular_component	cytoplasm
GO:0005506	molecular_function	iron ion binding
GO:0050113	molecular_function	inositol oxygenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.366
	SRR3591706	second leaf	5.212
	SRR3591707	mature leaf	0.789
	SRR3591708	Shoot apex	102.908
	SRR3591709	Stem	3.114
	SRR3591710	White floral bud	111.525
	SRR3591711	White flower	79.909
	SRR3591712	Green floral bud	56.209
	SRR3591713	Yellow flower	295.824
SRP173429	SRR8316895	Juvenile bud stage	47.400
	SRR8316896	Juvenile bud stage	79.236
	SRR8316897	Juvenile bud stage	27.169
	SRR8316894	Third green stage	24.044
	SRR8316900	Third green stage	34.299
	SRR8316901	Third green stage	50.081
	SRR8316898	Complete white stage	38.886
	SRR8316899	Complete white stage	29.867
	SRR8316903	Complete white stage	80.986
	SRR8316902	Silver flowering stage	41.108
	SRR8316904	Silver flowering stage	28.045
	SRR8316905	Silver flowering stage	1.678
	SRR8316906	Gold flowering stage	25.257
	SRR8316907	Gold flowering stage	15.711
	SRR8316908	Gold flowering stage	7.321
SRP132670	SRR6706286	Control	36.923
	SRR6706287	Light intensity 50%	25.422
	SRR6706288	Light intensity 20%	24.730
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	110.047
	CNS0095593	Slightly white alabastrum(diploid) 2	44.799
	CNS0095594	Slightly white alabastrum(diploid) 3	54.124
	CNS0095595	Whole white alabastrum(diploid) 2	19.524
	CNS0095596	Whole white alabastrum(diploid) 3	25.565
	CNS0095597	Whole white alabastrum(diploid) 4	14.444
	CNS0095598	Silvery flower (diploied) 1	37.802
	CNS0095599	Silvery flower (diploied) 2	29.779
	CNS0095600	Silvery flower (diploied) 3	82.239
	CNS0095601	Golden flower (diploid) 1	69.739
	CNS0095602	Golden flower (diploid) 2	114.107
	CNS0095603	Golden flower (diploid) 3	117.215
	CNS0095604	Slightly white alabastrum(tetraploid) 1	52.854
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.952
	CNS0095606	Slightly white alabastrum(tetraploid) 3	101.766
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.050
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.516
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.016
	CNS0095610	Silvery flower (tetraploid) 1	76.813
	CNS0095611	Silvery flower (tetraploid) 2	89.238
	CNS0095612	Silvery flower (tetraploid) 3	31.605
	CNS0095613	Golden flower (tetraploid) 1	120.108
	CNS0095614	Golden flower (tetraploid) 2	150.437
	CNS0095615	Golden flower (tetraploid) 3	71.202
CRA001975	CRR073297	Stem 1	42.679
	CRR073298	Stem 2	41.262
	CRR073299	Stem 3	23.657
	CRR073300	Leaf 1	22.945
	CRR073301	Leaf 2	35.634
	CRR073302	Leaf 3	18.227
	CRR073303	Juvenile bud 1	6.450
	CRR073304	Juvenile bud 2	6.890
	CRR073305	Juvenile bud 3	14.433
	CRR073306	Third green 1	1.682
	CRR073307	Third green 2	7.331
	CRR073308	Third green 3	8.892
	CRR073309	Second white 1	33.865
	CRR073310	Second white 2	25.362
	CRR073311	Second white 3	50.744
	CRR073312	Silver flowering 1	203.582
	CRR073313	Silver flowering 2	152.930
	CRR073314	Silver flowering 3	154.113
	CRR073315	Gold flowering 1	1.189
	CRR073316	Gold flowering 2	1.257
	CRR073317	Gold flowering 3	0.525
	CRR073318	Tawny withering 1	25.857
	CRR073319	Tawny withering 2	28.299
	CRR073320	Tawny withering 3	39.528