Detail information of GWHGAAZE031021


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010106236.10hypothetical protein L484_005097 [Morus notabilis]
COGYP_007092635.12E-16WD-40 repeat-containing protein
Swissprottr|O22607|MSI4_ARATH0WD-40 repeat-containing protein MSI4
trEMBLtr|W9S1N6|W9S1N6_9ROSA0Uncharacterized protein {ECO:0000313|EMBL:EXC09145.1}
TAIR10AT2G19520.10Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5185456751863902-
GWHAAZE00000009mRNA5185456751863902-
GWHAAZE00000009exon5185456751854662-
GWHAAZE00000009exon5185521151855310-
GWHAAZE00000009exon5185565251855731-
GWHAAZE00000009exon5185600451856078-
GWHAAZE00000009exon5185619851856309-
GWHAAZE00000009exon5185653851856611-
GWHAAZE00000009exon5185946851859549-
GWHAAZE00000009exon5185973151859917-
GWHAAZE00000009exon5186089551860970-
GWHAAZE00000009exon5186119951861273-
GWHAAZE00000009exon5186141151861476-
GWHAAZE00000009exon5186203151862093-
GWHAAZE00000009exon5186220151862287-
GWHAAZE00000009exon5186240551862426-
GWHAAZE00000009exon5186376951863902-
GWHAAZE00000009CDS5186376951863902-
GWHAAZE00000009CDS5186240551862426-
GWHAAZE00000009CDS5186220151862287-
GWHAAZE00000009CDS5186203151862093-
GWHAAZE00000009CDS5186141151861476-
GWHAAZE00000009CDS5186119951861273-
GWHAAZE00000009CDS5186089551860970-
GWHAAZE00000009CDS5185973151859917-
GWHAAZE00000009CDS5185946851859549-
GWHAAZE00000009CDS5185653851856611-
GWHAAZE00000009CDS5185619851856309-
GWHAAZE00000009CDS5185600451856078-
GWHAAZE00000009CDS5185565251855731-
GWHAAZE00000009CDS5185521151855310-
GWHAAZE00000009CDS5185456751854662-
Transcript Sequence

Network for GWHGAAZE031021

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12265.9CAF1C_H4-bd16671.50E-08
PF00400.33WD401501840.074
PF00400.33WD402192540.082
PF00400.33WD402672990.0069
PF00400.33WD403093481.30E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K10752RBBP4, HAT2, CAF1, MIS16 Cellular senescence map04218

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.608
SRR3591706second leaf22.289
SRR3591707mature leaf11.925
SRR3591708Shoot apex27.609
SRR3591709Stem20.947
SRR3591710White floral bud32.266
SRR3591711White flower35.163
SRR3591712Green floral bud23.454
SRR3591713Yellow flower32.267
SRP173429 SRR8316895Juvenile bud stage 17.334
SRR8316896Juvenile bud stage 18.716
SRR8316897Juvenile bud stage 9.767
SRR8316894Third green stage 7.353
SRR8316900Third green stage 19.277
SRR8316901Third green stage 20.194
SRR8316898Complete white stage 11.145
SRR8316899Complete white stage 35.745
SRR8316903Complete white stage 16.098
SRR8316902Silver flowering stage9.726
SRR8316904Silver flowering stage10.284
SRR8316905Silver flowering stage5.721
SRR8316906Gold flowering stage 19.217
SRR8316907Gold flowering stage 18.861
SRR8316908Gold flowering stage 22.727
SRP132670SRR6706286Control21.799
SRR6706287Light intensity 50%22.140
SRR6706288Light intensity 20%23.023
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.694
CNS0095593Slightly white alabastrum(diploid) 221.073
CNS0095594Slightly white alabastrum(diploid) 315.981
CNS0095595Whole white alabastrum(diploid) 215.689
CNS0095596Whole white alabastrum(diploid) 313.584
CNS0095597Whole white alabastrum(diploid) 412.455
CNS0095598Silvery flower (diploied) 128.926
CNS0095599Silvery flower (diploied) 226.771
CNS0095600Silvery flower (diploied) 324.769
CNS0095601Golden flower (diploid) 129.175
CNS0095602Golden flower (diploid) 223.513
CNS0095603Golden flower (diploid) 323.757
CNS0095604Slightly white alabastrum(tetraploid) 118.945
CNS0095605Slightly white alabastrum(tetraploid) 216.991
CNS0095606Slightly white alabastrum(tetraploid) 331.564
CNS0095607Whole white alabastrum(tetraploid) 117.024
CNS0095608Whole white alabastrum(tetraploid) 212.330
CNS0095609Whole white alabastrum(tetraploid) 317.316
CNS0095610Silvery flower (tetraploid) 119.705
CNS0095611Silvery flower (tetraploid) 222.230
CNS0095612Silvery flower (tetraploid) 321.430
CNS0095613Golden flower (tetraploid) 113.261
CNS0095614Golden flower (tetraploid) 214.696
CNS0095615Golden flower (tetraploid) 311.522
CRA001975CRR073297Stem 122.094
CRR073298Stem 222.741
CRR073299Stem 323.514
CRR073300Leaf 124.042
CRR073301Leaf 223.020
CRR073302Leaf 319.416
CRR073303Juvenile bud 124.676
CRR073304Juvenile bud 217.028
CRR073305Juvenile bud 324.386
CRR073306Third green 110.492
CRR073307Third green 211.494
CRR073308Third green 310.587
CRR073309Second white 116.405
CRR073310Second white 217.904
CRR073311Second white 314.792
CRR073312Silver flowering 110.415
CRR073313Silver flowering 210.332
CRR073314Silver flowering 39.278
CRR073315Gold flowering 119.080
CRR073316Gold flowering 216.463
CRR073317Gold flowering 316.730
CRR073318Tawny withering 122.020
CRR073319Tawny withering 219.696
CRR073320Tawny withering 319.609