Gene detail

Detail information of GWHGAAZE031026

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011072524.1	0	PREDICTED: chaperonin CPN60-like 2, mitochondrial [Sesamum indicum]
COG	YP_006371119.1	2E-175	protein GroL
Swissprot	tr\|Q93ZM7\|CH60C_ARATH	0	Chaperonin CPN60-like 2, mitochondrial (Precursor)
trEMBL	tr\|A0A022Q0S6\|A0A022Q0S6_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU21369.1}
TAIR10	AT3G13860.1	0	heat shock protein 60-3A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	51933195	51939348	+
GWHAAZE00000009	mRNA	51933195	51939348	+
GWHAAZE00000009	exon	51933195	51933317	+
GWHAAZE00000009	exon	51933672	51933768	+
GWHAAZE00000009	exon	51934960	51935067	+
GWHAAZE00000009	exon	51935141	51935316	+
GWHAAZE00000009	exon	51935509	51935604	+
GWHAAZE00000009	exon	51935695	51935799	+
GWHAAZE00000009	exon	51936122	51936208	+
GWHAAZE00000009	exon	51936335	51936424	+
GWHAAZE00000009	exon	51936590	51936670	+
GWHAAZE00000009	exon	51936739	51936807	+
GWHAAZE00000009	exon	51936888	51936965	+
GWHAAZE00000009	exon	51937549	51937644	+
GWHAAZE00000009	exon	51937760	51937859	+
GWHAAZE00000009	exon	51937933	51938036	+
GWHAAZE00000009	exon	51938123	51938228	+
GWHAAZE00000009	exon	51939070	51939148	+
GWHAAZE00000009	exon	51939243	51939348	+
GWHAAZE00000009	CDS	51933195	51933317	+
GWHAAZE00000009	CDS	51933672	51933768	+
GWHAAZE00000009	CDS	51934960	51935067	+
GWHAAZE00000009	CDS	51935141	51935316	+
GWHAAZE00000009	CDS	51935509	51935604	+
GWHAAZE00000009	CDS	51935695	51935799	+
GWHAAZE00000009	CDS	51936122	51936208	+
GWHAAZE00000009	CDS	51936335	51936424	+
GWHAAZE00000009	CDS	51936590	51936670	+
GWHAAZE00000009	CDS	51936739	51936807	+
GWHAAZE00000009	CDS	51936888	51936965	+
GWHAAZE00000009	CDS	51937549	51937644	+
GWHAAZE00000009	CDS	51937760	51937859	+
GWHAAZE00000009	CDS	51937933	51938036	+
GWHAAZE00000009	CDS	51938123	51938228	+
GWHAAZE00000009	CDS	51939070	51939148	+
GWHAAZE00000009	CDS	51939243	51939348	+

Transcript Sequence
>GWHTAAZE031060 ATGATTACTTCGTCCTCCTCGTCGTCCTCAAATTGGGTATCACCTTCAACTGAAGATAATGTGGCTGGGGAAACTCCGACGGGAAGGGCTAAAACGACCTTTTTGCCCTTGGTTTGGGGGCATGTGCATAGAGCGAATAGACTGAGACATGCCGTCGGTGAAAGCGGCGGAGATAGAGGAGGGATCGGAGAAGGATTTGTTGTGGCAAAAGGTGTCGATGCCAAGATATGGTTGCGGTTGTCACTTCCCATTACCCTTTTGCTAGCCGGTGTTCCTTTCTTTCATATAATTACATGGTTTTGTAATGTTGTGGGAATTGATACATCTGGTACCACTTGTGCCACCGTTCTTACTCAGGCAATATTCACGGAAGGTTGCAAGTCAGTAGCTGCTGGTGTAAATGTCATGGATTTGCGCTCTGGTATCAGTATGGCAATTGATGCTGTTATAGCTGACTTGAAGAGCAGATCACTAATGATAAGCACACAAGAAGAAATTACACAGGTGGCCACTATCTCCGCCAATGGTGAGCGCGAAATTGGGGAATTGATAGCACATGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACAGTGGCTGATGGAAATACTTTGGATAATGAACTGGAAGTGGTGGAAGGGATGAAGCTAGGCAGGGGTTATATATCTCCTTATTTTGTTAATGACGAGAAGACCCAGAAATGTGAATTAGAAAATCCCTTGATCCTCATTCATGAGAAGAAAATTTCGTACATGAGCATACTTGTGAGAGTATTGGAGCTGGCTGTAAAGAAAAACCGCCCCATGCTTATTGTTGCTGAGGATGTAGAGAGTGATGCACTTGCTATGCTTATCATTAACAAGCACCGTGCTGGGGTTAAGGTTTGTGCCATCAAAACTCCTGGTTTTGGGGATAACAGAAGAGCCAATTTAGAGGACCTTGCTGTTCTTACTGGAGGACAGGTTATCAGTGAAGAACGCGGTTTCAGTCTTGACAAAGTACAAATTGATATGCTCGGTACTGCAAAAAAGGTCACTGTTTCTCTTGATGACACAATAATTCTACATGGAGGTGGGGATAAGAAGCAGATTGAAGAGAGATGTGAACAGCTAAGGGAAGCTGTTCAGAAGAGTACTGCCATGTTTGACAAAGAGAAAGCACAAGAGCGGTTATCAAAACTATCTGGAGGTGTTGCGGTTTTCAAGGTTGGAGGTGCCAGTGAGGCGGAAGTTGGAGAAAGGAAAGATCGGGTTACCGATGCTTTAAATGCTACAAAAGCTGCTGTGGAAGAGGGCGTTGTTCCTGGCGGCGGGGTTGCTCTTTTATATGCCACAAGATTTCTCCAGAACCTTCAAACTGCAAACAGTGACCAGAAAAGAGGAGTCCAAATAATTGAGAATGCTCTTAAGGCACCAACTTTCACAATAGTCTCGAATGCTGGTGGTGATGGTGCTCTGGTTATTGGCAAGCTATTGGAACAAGATGATCTCAATTTAGGTTATGATGCTGCCAAAGGTCGATACGTGAACATGGTGGAGGCTGGAATTATAGATCCACTCAAAGTTATTAGAACAGCCTTAGTTGATGCTTGCAGCATCTCATTATTATTGACAGCAGCCGAGGCAACTGTTGTTGACCTTCAAGGAGAGAAGAACCCACTCGCAAATCGTATGCCCAACATGGACGAAATGGGTTACTGA

Network for GWHGAAZE031026

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.25	Cpn60_TCP1	110	536	7.10E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04077	groEL, HSPD1	RNA degradation	map03018
K04077	groEL, HSPD1	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0042026	biological_process	protein refolding
GO:0006457	biological_process	protein folding
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.970
	SRR3591706	second leaf	2.503
	SRR3591707	mature leaf	3.047
	SRR3591708	Shoot apex	15.304
	SRR3591709	Stem	3.849
	SRR3591710	White floral bud	3.546
	SRR3591711	White flower	3.534
	SRR3591712	Green floral bud	4.498
	SRR3591713	Yellow flower	2.612
SRP173429	SRR8316895	Juvenile bud stage	9.014
	SRR8316896	Juvenile bud stage	15.365
	SRR8316897	Juvenile bud stage	10.228
	SRR8316894	Third green stage	4.633
	SRR8316900	Third green stage	9.964
	SRR8316901	Third green stage	9.113
	SRR8316898	Complete white stage	1.775
	SRR8316899	Complete white stage	9.451
	SRR8316903	Complete white stage	2.894
	SRR8316902	Silver flowering stage	1.467
	SRR8316904	Silver flowering stage	2.295
	SRR8316905	Silver flowering stage	0.873
	SRR8316906	Gold flowering stage	3.732
	SRR8316907	Gold flowering stage	3.629
	SRR8316908	Gold flowering stage	5.801
SRP132670	SRR6706286	Control	7.684
	SRR6706287	Light intensity 50%	9.410
	SRR6706288	Light intensity 20%	8.433
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.030
	CNS0095593	Slightly white alabastrum(diploid) 2	8.890
	CNS0095594	Slightly white alabastrum(diploid) 3	10.532
	CNS0095595	Whole white alabastrum(diploid) 2	7.017
	CNS0095596	Whole white alabastrum(diploid) 3	6.265
	CNS0095597	Whole white alabastrum(diploid) 4	4.578
	CNS0095598	Silvery flower (diploied) 1	8.881
	CNS0095599	Silvery flower (diploied) 2	6.825
	CNS0095600	Silvery flower (diploied) 3	4.305
	CNS0095601	Golden flower (diploid) 1	5.163
	CNS0095602	Golden flower (diploid) 2	2.180
	CNS0095603	Golden flower (diploid) 3	3.047
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.186
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.140
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.609
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.738
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.854
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.175
	CNS0095610	Silvery flower (tetraploid) 1	5.896
	CNS0095611	Silvery flower (tetraploid) 2	4.165
	CNS0095612	Silvery flower (tetraploid) 3	2.278
	CNS0095613	Golden flower (tetraploid) 1	2.173
	CNS0095614	Golden flower (tetraploid) 2	3.030
	CNS0095615	Golden flower (tetraploid) 3	0.775
CRA001975	CRR073297	Stem 1	9.468
	CRR073298	Stem 2	9.356
	CRR073299	Stem 3	5.793
	CRR073300	Leaf 1	7.859
	CRR073301	Leaf 2	7.777
	CRR073302	Leaf 3	5.277
	CRR073303	Juvenile bud 1	5.368
	CRR073304	Juvenile bud 2	2.141
	CRR073305	Juvenile bud 3	5.011
	CRR073306	Third green 1	0.259
	CRR073307	Third green 2	0.529
	CRR073308	Third green 3	0.695
	CRR073309	Second white 1	0.435
	CRR073310	Second white 2	1.226
	CRR073311	Second white 3	0.662
	CRR073312	Silver flowering 1	0.213
	CRR073313	Silver flowering 2	0.051
	CRR073314	Silver flowering 3	0.332
	CRR073315	Gold flowering 1	1.088
	CRR073316	Gold flowering 2	3.112
	CRR073317	Gold flowering 3	1.212
	CRR073318	Tawny withering 1	5.059
	CRR073319	Tawny withering 2	4.605
	CRR073320	Tawny withering 3	5.633