Gene detail

Detail information of GWHGAAZE031031

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276942.1	0	PREDICTED: uncharacterized protein LOC100242981 [Vitis vinifera]
COG	YP_006257070.1	2E-29	5'/3'-nucleotidase SurE
trEMBL	tr\|D7TZV8\|D7TZV8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35904.3}
TAIR10	AT1G72880.2	4E-134	Survival protein SurE-like phosphatase/nucleotidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52019672	52024326	+
GWHAAZE00000009	mRNA	52019672	52024326	+
GWHAAZE00000009	exon	52019672	52019958	+
GWHAAZE00000009	exon	52020123	52020217	+
GWHAAZE00000009	exon	52020403	52020470	+
GWHAAZE00000009	exon	52020555	52020598	+
GWHAAZE00000009	exon	52020779	52020856	+
GWHAAZE00000009	exon	52020954	52021107	+
GWHAAZE00000009	exon	52022962	52023114	+
GWHAAZE00000009	exon	52023222	52023329	+
GWHAAZE00000009	exon	52023644	52023709	+
GWHAAZE00000009	exon	52024165	52024326	+
GWHAAZE00000009	CDS	52019672	52019958	+
GWHAAZE00000009	CDS	52020123	52020217	+
GWHAAZE00000009	CDS	52020403	52020470	+
GWHAAZE00000009	CDS	52020555	52020598	+
GWHAAZE00000009	CDS	52020779	52020856	+
GWHAAZE00000009	CDS	52020954	52021107	+
GWHAAZE00000009	CDS	52022962	52023114	+
GWHAAZE00000009	CDS	52023222	52023329	+
GWHAAZE00000009	CDS	52023644	52023709	+
GWHAAZE00000009	CDS	52024165	52024263	+
GWHAAZE00000009	three_prime_UTR	52024264	52024326	+

Transcript Sequence
>GWHTAAZE031065 ATGACTACCTCAGCCGTGAAGAACAATTTTTTGCCTCCAGGTCTTGTATCCAATCTTCAGGAAGTCCTAAGCAGAAAGAACGGCCAATTAGACCAATCCAAAAACAAAGACGAATCCACGGTGCCCTCTTCCTCTGATAGCCTTGAAGAAAATCCGGATATAGATAGGTCAAAGCCGATTATTGTGGTCACAAATGCCGATGGGATTGAGTCACCGGGCCTTACATATCTAGTTGAAGCTCTCGTTCAAAATGGAATCTACAATGTCCACGTCATCTCTCCTCAATCGGATAAATCCTTGTCCGGTCATTCTGTGACTCATCGAGAGACAGTTGCAGTCACTCCAGCTGAAATTAAAGGTGCCACTGCTTACGAAGTTGCTGGAACTCCTGTCGATTGTGTGTCGTTAGCATTATCAGGAGCATTGTTCTCTTGGTCGAAGCCATTGCTGGTCATTAGTGGAGTCAACAGGGGTTCAAGTTGTGGCCATCATATGTTGTATTCAGGGGTTGTAGCTGCTGCTAGAGAAGCGTTGATTAGTGGTGTACCGTCTATATCCATATCACTGAATTGGAAGAAGGATGAAAGTCAAGAAAGTGATTTCAAAGATGCGGTGTCTGTCTGTTTGCCACTGCTAAATGCTGCCATGAAAGACATAGAGAAAGGAAATTTCCCAAAAGGTTGCTTACTGGATATAGAAGTTCCTACCTTCCCTTCAACAAATAAGGGACTCAAATTAACCAAGCAAAGTTTGTGGAGGTCCACACCTAGCTGGCAAGCTATTTCAGCCAATAGGCACCCGTATGCTGGACGTTTCATGTCAAATCAGCAAAGTCTTGGTATGCAGCTTGCACAGCTAGGTCGAGATGCCTCCGCTGCTGGTGCGGCTCGGCGCTTGACCACACAGAGAAAGCTTGTGGAGGTTGAATCAGTAGGTGTTGCAGGGAAATCTGACTCCAAACGAACAGTGAAGTACTTCCGTTTAGAGTTTCAAGACAAGGAGCAGGATGATGTGGACGAGAATCTAGATTTCAGAGCTCTTGAAAGTGGATTTGTGGCAGTCACTCCGCTATATCTTTCTTCACATATAGAGTTGGACACTCAAGCAGCGGTTTCTGATTGGATTTCCAGTGCCTTTCAAACCGATGTATAGAGCTTCCAGGGATCCACATTACCAGTAAATTATGTACATTTCACGATGAAGTTTATGTCAAAT

Network for GWHGAAZE031031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01975.18	SurE	61	253	2.50E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03787	surE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240
		Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0008252	molecular_function	nucleotidase activity
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.121
	SRR3591706	second leaf	36.290
	SRR3591707	mature leaf	25.778
	SRR3591708	Shoot apex	66.006
	SRR3591709	Stem	50.725
	SRR3591710	White floral bud	48.874
	SRR3591711	White flower	47.340
	SRR3591712	Green floral bud	45.192
	SRR3591713	Yellow flower	46.074
SRP173429	SRR8316895	Juvenile bud stage	28.056
	SRR8316896	Juvenile bud stage	38.149
	SRR8316897	Juvenile bud stage	16.850
	SRR8316894	Third green stage	16.468
	SRR8316900	Third green stage	43.529
	SRR8316901	Third green stage	39.636
	SRR8316898	Complete white stage	12.116
	SRR8316899	Complete white stage	41.002
	SRR8316903	Complete white stage	27.761
	SRR8316902	Silver flowering stage	14.524
	SRR8316904	Silver flowering stage	24.257
	SRR8316905	Silver flowering stage	11.014
	SRR8316906	Gold flowering stage	32.769
	SRR8316907	Gold flowering stage	32.042
	SRR8316908	Gold flowering stage	33.848
SRP132670	SRR6706286	Control	30.574
	SRR6706287	Light intensity 50%	29.459
	SRR6706288	Light intensity 20%	31.416
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.127
	CNS0095593	Slightly white alabastrum(diploid) 2	23.892
	CNS0095594	Slightly white alabastrum(diploid) 3	19.644
	CNS0095595	Whole white alabastrum(diploid) 2	25.479
	CNS0095596	Whole white alabastrum(diploid) 3	28.979
	CNS0095597	Whole white alabastrum(diploid) 4	25.945
	CNS0095598	Silvery flower (diploied) 1	28.059
	CNS0095599	Silvery flower (diploied) 2	19.257
	CNS0095600	Silvery flower (diploied) 3	34.189
	CNS0095601	Golden flower (diploid) 1	26.281
	CNS0095602	Golden flower (diploid) 2	43.650
	CNS0095603	Golden flower (diploid) 3	35.978
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.700
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.090
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.900
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.829
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.922
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.897
	CNS0095610	Silvery flower (tetraploid) 1	31.888
	CNS0095611	Silvery flower (tetraploid) 2	38.974
	CNS0095612	Silvery flower (tetraploid) 3	34.035
	CNS0095613	Golden flower (tetraploid) 1	24.518
	CNS0095614	Golden flower (tetraploid) 2	28.900
	CNS0095615	Golden flower (tetraploid) 3	32.424
CRA001975	CRR073297	Stem 1	50.344
	CRR073298	Stem 2	48.790
	CRR073299	Stem 3	55.095
	CRR073300	Leaf 1	52.516
	CRR073301	Leaf 2	48.456
	CRR073302	Leaf 3	49.459
	CRR073303	Juvenile bud 1	52.389
	CRR073304	Juvenile bud 2	39.747
	CRR073305	Juvenile bud 3	56.383
	CRR073306	Third green 1	30.285
	CRR073307	Third green 2	29.881
	CRR073308	Third green 3	29.326
	CRR073309	Second white 1	32.561
	CRR073310	Second white 2	24.357
	CRR073311	Second white 3	30.635
	CRR073312	Silver flowering 1	36.182
	CRR073313	Silver flowering 2	37.155
	CRR073314	Silver flowering 3	27.294
	CRR073315	Gold flowering 1	33.915
	CRR073316	Gold flowering 2	36.830
	CRR073317	Gold flowering 3	39.612
	CRR073318	Tawny withering 1	41.352
	CRR073319	Tawny withering 2	32.132
	CRR073320	Tawny withering 3	46.838