Gene detail

Detail information of GWHGAAZE031035

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006426587.1	0	hypothetical protein CICLE_v10025724mg [Citrus clementina]
COG	YP_002461804.1	5E-99	DEAD/DEAH box helicase
Swissprot	tr\|P41381\|IF4A8_TOBAC	0	Eukaryotic initiation factor 4A-8
trEMBL	tr\|A0A067FG88\|A0A067FG88_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO65150.1}
TAIR10	AT3G13920.1	0	eukaryotic translation initiation factor 4A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	52065229	52067067	-
GWHAAZE00000009	mRNA	52065229	52067067	-
GWHAAZE00000009	exon	52065229	52065864	-
GWHAAZE00000009	exon	52065973	52066403	-
GWHAAZE00000009	exon	52066783	52066889	-
GWHAAZE00000009	exon	52067000	52067067	-
GWHAAZE00000009	CDS	52067000	52067067	-
GWHAAZE00000009	CDS	52066783	52066889	-
GWHAAZE00000009	CDS	52065973	52066403	-
GWHAAZE00000009	CDS	52065229	52065864	-

Transcript Sequence
>GWHTAAZE031069 ATGGCAGGCTTGGCTCCAGAAGGATCACAATTTGATGCTCGTCAGTATGATGCCAAAATGAGTGATTTGCTGTCATCTGATGGACAAGAGTTCTTCACATCATATGATGAAGTGCATGACAGCTTTGACGTTATGGGGTTGCAAGAGAACCTACTAAGGGGGATTTATGCGTATGGGTTTGAAAAGCCCTCTGCAATCCAGCAGAGGGGAATTGTTCCATTCTGCAAGGGCCTTGATGTTATTCAGCAGGCTCAATCTGGAACCGGGAAAACGGCAACTTTCTGCTCTGGAATCTTGCAACAACTTGATTATGGTATAGTCCAATGCCAGGCGTTGGTTCTGGCTCCCACTCGAGAACTTGCACAACAAATTGAGAAGGTTATGAGGGCTCTTGGGGACTATCTTGGTGTTAAGGTTCATGCTTGTGTTGGCGGGACCAGTGTTCGTGAGGATCAGCGTATTCTATCAAGCGGTGTTCATGTCGTTGTTGGGACCCCTGGTCGTGTGTTTGACATGTTGCGTAGACAGTCACTTCGGCCCGATTATATTAAAATGTTTGTCTTGGACGAGGCAGATGAAATGCTTTCCCGAGGTTTTAAGGATCAGATCTATGACATTTTCCAGCTGCTGCCAGCCAAAGTCCAAGTTGGAGTATTCTCAGCCACAATGCCCCCTGAAGCCCTTGAGATCACTAGGAAGTTCATGAATAAGCCTGTGAGGATCTTGGTAAAACGAGATGAACTAACTCTCGAGGGTATCAAACAGTTCTATGTTAATGTTGAAAAGGAGGATTGGAAGCTTGAAACCCTCTGTGATCTTTACGAGACCCTGGCCATAACCCAGAGTGTCATCTTTGTGAACACAAGGCGCAAGGTTGACTGGCTCACTGACAAAATGCGGAGCCGAGACCACACAGTGTCAGCTACCCATGGAGACATGGATCAGAATACTCGGGATATAATCATGCGTGAATTTCGTTCTGGTTCTTCTCGTGTTCTTATAACCACTGATCTATTGGCTCGTGGCATTGATGTTCAGCAAGTCTCCCTTGTCATAAACTATGATCTGCCAACTCAGCCAGAGAATTACCTTCATCGTATTGGACGAAGTGGACGTTTTGGAAGAAAGGGCGTTGCCATAAACTTTGTGACCAAGGAAGACGAGAGAATGTTGTTCGATATTCAGAAGTTCTATAATGTGGTTGTGGAAGAACTGCCATCAAATGTTGCCGATCTCCTCTAA

Network for GWHGAAZE031035

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	65	226	9.20E-40
PF00271.32	Helicase_C	266	374	6.90E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03257	EIF4A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.227
	SRR3591706	second leaf	18.407
	SRR3591707	mature leaf	11.370
	SRR3591708	Shoot apex	18.929
	SRR3591709	Stem	19.923
	SRR3591710	White floral bud	16.226
	SRR3591711	White flower	22.123
	SRR3591712	Green floral bud	27.849
	SRR3591713	Yellow flower	21.657
SRP173429	SRR8316895	Juvenile bud stage	15.343
	SRR8316896	Juvenile bud stage	24.111
	SRR8316897	Juvenile bud stage	10.069
	SRR8316894	Third green stage	8.468
	SRR8316900	Third green stage	26.107
	SRR8316901	Third green stage	25.205
	SRR8316898	Complete white stage	5.992
	SRR8316899	Complete white stage	22.778
	SRR8316903	Complete white stage	10.245
	SRR8316902	Silver flowering stage	9.988
	SRR8316904	Silver flowering stage	10.728
	SRR8316905	Silver flowering stage	4.989
	SRR8316906	Gold flowering stage	18.386
	SRR8316907	Gold flowering stage	17.090
	SRR8316908	Gold flowering stage	17.148
SRP132670	SRR6706286	Control	15.610
	SRR6706287	Light intensity 50%	17.109
	SRR6706288	Light intensity 20%	17.625
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.503
	CNS0095593	Slightly white alabastrum(diploid) 2	14.568
	CNS0095594	Slightly white alabastrum(diploid) 3	17.046
	CNS0095595	Whole white alabastrum(diploid) 2	17.836
	CNS0095596	Whole white alabastrum(diploid) 3	14.556
	CNS0095597	Whole white alabastrum(diploid) 4	15.219
	CNS0095598	Silvery flower (diploied) 1	13.989
	CNS0095599	Silvery flower (diploied) 2	12.286
	CNS0095600	Silvery flower (diploied) 3	20.301
	CNS0095601	Golden flower (diploid) 1	11.035
	CNS0095602	Golden flower (diploid) 2	20.817
	CNS0095603	Golden flower (diploid) 3	18.903
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.587
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.531
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.700
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.260
	CNS0095610	Silvery flower (tetraploid) 1	19.550
	CNS0095611	Silvery flower (tetraploid) 2	18.819
	CNS0095612	Silvery flower (tetraploid) 3	21.835
	CNS0095613	Golden flower (tetraploid) 1	14.643
	CNS0095614	Golden flower (tetraploid) 2	22.465
	CNS0095615	Golden flower (tetraploid) 3	27.024
CRA001975	CRR073297	Stem 1	24.285
	CRR073298	Stem 2	20.859
	CRR073299	Stem 3	21.765
	CRR073300	Leaf 1	25.630
	CRR073301	Leaf 2	24.703
	CRR073302	Leaf 3	19.782
	CRR073303	Juvenile bud 1	25.115
	CRR073304	Juvenile bud 2	19.226
	CRR073305	Juvenile bud 3	24.566
	CRR073306	Third green 1	7.137
	CRR073307	Third green 2	9.192
	CRR073308	Third green 3	7.615
	CRR073309	Second white 1	16.786
	CRR073310	Second white 2	14.604
	CRR073311	Second white 3	14.210
	CRR073312	Silver flowering 1	23.596
	CRR073313	Silver flowering 2	29.534
	CRR073314	Silver flowering 3	23.020
	CRR073315	Gold flowering 1	32.299
	CRR073316	Gold flowering 2	35.739
	CRR073317	Gold flowering 3	27.047
	CRR073318	Tawny withering 1	22.291
	CRR073319	Tawny withering 2	17.423
	CRR073320	Tawny withering 3	30.310